PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G020600.1.p
Common NameGLYMA_19G020600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 490aa    MW: 53837.4 Da    PI: 6.394
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G020600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY955.4e-30203261259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqK  kg+++pr+YYrCt a  Cpv+k+v+r+a+d +++++tYeg+Hnh+
  Glyma.19G020600.1.p 203 HDGCQWRKYGQKIAKGNPCPRAYYRCTLApACPVRKQVQRCADDMSILITTYEGTHNHP 261
                          7**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-31188263IPR003657WRKY domain
SuperFamilySSF1182903.92E-27195263IPR003657WRKY domain
PROSITE profilePS5081128.529197263IPR003657WRKY domain
SMARTSM007741.8E-35202262IPR003657WRKY domain
PfamPF031061.4E-26204261IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MEAMLKLSSL CGQEIDDKRD TSICSEEDLC IEKGSKEDKL ESAKAEMSKV KEENERLKMM  60
IERVGKNYHS LQLRFFDILH RETSNKGVED SAVSLDEVEE PKLVSLCLGT SPWEHKKDGI  120
ICNSSKHKEN EDLEASLTLG LDCKGVSSKE QVSDMNTSEE KEEDSTNKLV RTKDGGDEIS  180
EITPPAKRAR VCVRARCDSP VMHDGCQWRK YGQKIAKGNP CPRAYYRCTL APACPVRKQV  240
QRCADDMSIL ITTYEGTHNH PIPASATAMA STTSAAVSML LSGSSTSQPT DHSFAYHANS  300
PTLFSGVNFS LLDQPRANQV LLPTPSSHLL PTITLDLTST PSYSLNQGNC LPSNFASTPR  360
FPPLSLNFWS PESNIPLSFW GKGIPNNGTI PIDKTHIKPF NIGNQFQEHF YQHYFKNQTP  420
FREALAETLT KAISTDTSFR SAIAAAVSSI RGQGSSSENK GDGEVLGSGL SLKLGEHPQL  480
ASSNSLNKNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-21193264878Probable WRKY transcription factor 4
2ayd_A8e-21189263174WRKY transcription factor 1
2lex_A9e-21193264878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.283480.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G020600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014627007.20.0probable WRKY transcription factor 72
TrEMBLA0A0R0EQQ20.0A0A0R0EQQ2_SOYBN; Uncharacterized protein (Fragment)
STRINGGLYMA19G02440.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.14e-57WRKY DNA-binding protein 72