PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G010100.1.p
Common NameLOC100813420
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 268aa    MW: 30674.1 Da    PI: 4.4133
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G010100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.61.4e-2048101356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k++++++eq++ Le+ Fe+++++  e++++LAkklgL+ rqV vWFqNrRa++k
  Glyma.19G010100.1.p  48 KKHRLSSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 101
                          67889************************************************9 PP
2HD-ZIP_I/II134.53.8e-4347138192
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekk+rls+eqv+lLE+sFeee+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l ++ +++ ke+e+L++e
  Glyma.19G010100.1.p  47 EKKHRLSSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDTLLSSYDSIMKENEKLKSE 136
                          69**************************************************************************************99 PP

          HD-ZIP_I/II  91 lk 92 
                          + 
  Glyma.19G010100.1.p 137 VV 138
                          86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.72E-2035105IPR009057Homeodomain-like
PROSITE profilePS5007118.38243103IPR001356Homeobox domain
SMARTSM003894.4E-1945107IPR001356Homeobox domain
PfamPF000467.8E-1848101IPR001356Homeobox domain
CDDcd000864.73E-1948104No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2249110IPR009057Homeodomain-like
PRINTSPR000313.9E-67483IPR000047Helix-turn-helix motif
PROSITE patternPS00027078101IPR017970Homeobox, conserved site
PRINTSPR000313.9E-68399IPR000047Helix-turn-helix motif
PfamPF021831.6E-18103145IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MLFLGNTELA FRGRSIMSME EASKRRPFFT SPDELYDEEY YEKQSPEKKH RLSSEQVHLL  60
EKSFEEENKL EPERKTQLAK KLGLQPRQVA VWFQNRRARW KTKQLERDYD VLKSSYDTLL  120
SSYDSIMKEN EKLKSEVVSL NEKLQVQAKE VPEEPLCDKK VDPIPVDEDM APIFGTRVED  180
HLSSGSVGSA VVDEGSPQVV VDSVDSYILA DNYGGCVGPV ERVQSEEEDG SDDGRSYLDV  240
FVVSETEHQN HEEGETLGWW TNMYYVG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195103RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.314550.0cotyledon| flower| hypocotyl| leaf| root| somatic embryo| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G010100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937280.0BT093728.1 Soybean clone JCVI-FLGm-24I10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001240210.10.0homeobox-leucine zipper protein HAT5-like
SwissprotQ022833e-86HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A0R0EGJ90.0A0A0R0EGJ9_SOYBN; Uncharacterized protein
TrEMBLC6T8D20.0C6T8D2_SOYBN; Uncharacterized protein
STRINGGLYMA19G01300.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112833039
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-79homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]