PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.19G004900.1.p

Common Name

GLYMA_19G004900, LOC100820187

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 169aa MW: 18407.6 Da PI: 7.3606

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.19G004900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.8	1e-44	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l Glyma.19G004900.1.p 10 PCAACKFLRRKCMPDCIFAPYFPPEEPHKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQKQVLRL 99 7*************************************************************************************** PP DUF260 91 kaelallke 99 ++el+++++ Glyma.19G004900.1.p 100 QKELDATNA 108 **99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.985	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-44	10	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MASSSYSNSP CAACKFLRRK CMPDCIFAPY FPPEEPHKFA NVHKIFGASN VSKLLNEVQP 60 HQREDAVNSL AYEAEARIKD PVYGCVGAIS VLQKQVLRLQ KELDATNADL IRYSACNEMP 120 NLGGRSRMCS DDGGGGGSSS LAHSHGFYYP NWNNDPCGNN NGYPRGDI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-64	7	119	8	119	LOB family transfactor Ramosa2.1
5ly0_B	2e-64	7	119	8	119	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.19G004900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	1e-116	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003554815.1	1e-124	LOB domain-containing protein 25
Refseq	XP_006603773.1	1e-124	LOB domain-containing protein 25
Refseq	XP_006603775.1	1e-124	LOB domain-containing protein 25
Refseq	XP_014626970.1	1e-124	LOB domain-containing protein 25
Refseq	XP_014626971.1	1e-124	LOB domain-containing protein 25
Refseq	XP_028217535.1	1e-124	LOB domain-containing protein 25-like
Refseq	XP_028217536.1	1e-124	LOB domain-containing protein 25-like
Refseq	XP_028217537.1	1e-124	LOB domain-containing protein 25-like
Refseq	XP_028217538.1	1e-124	LOB domain-containing protein 25-like
Swissprot	Q8L8Q3	5e-69	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A0B2QV33	1e-122	A0A0B2QV33_GLYSO; LOB domain-containing protein 25
TrEMBL	K7MVP6	1e-122	K7MVP6_SOYBN; Uncharacterized protein
STRING	GLYMA19G00390.2	1e-123	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1091	34	112
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	2e-71	LOB domain-containing protein 25

Link Out ? help Back to Top
Phytozome	Glyma.19G004900.1.p
Entrez Gene	100820187

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]