PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G301500.1.p
Common NameGLYMA_18G301500, NAC14
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 230aa    MW: 26173.4 Da    PI: 9.2729
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G301500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.54.6e-52141381128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeelv +yLk+kv + +l++ ++i+evd++k++PwdLp      e+e yfFs+++ ky++g+r+nrat+sgyWkatg dk
  Glyma.18G301500.1.p  14 LPPGFRFHPTDEELVLQYLKRKVFSCPLPA-SIIPEVDVCKSDPWDLPGD---LEQERYFFSTKEAKYPNGNRSNRATNSGYWKATGLDK 99 
                          79****************************.89***************54...46799******************************** PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++++ ++++vg+kktLvfy+g+ p+g++tdW+mheyrl
  Glyma.18G301500.1.p 100 QIVTSkGNQVVGMKKTLVFYRGKPPHGSRTDWIMHEYRL 138
                          *998857778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.16E-619161IPR003441NAC domain
PROSITE profilePS5100558.16214161IPR003441NAC domain
PfamPF023652.0E-2715138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MEKVSFVKNG ELRLPPGFRF HPTDEELVLQ YLKRKVFSCP LPASIIPEVD VCKSDPWDLP  60
GDLEQERYFF STKEAKYPNG NRSNRATNSG YWKATGLDKQ IVTSKGNQVV GMKKTLVFYR  120
GKPPHGSRTD WIMHEYRLNI LNASQSHVPM ENWVLCRIFL KKRSGAKNGE ESNKVRNSKV  180
VFYDFLAQNK TDSSSSAASG ITHEHESDEH DHEESSSSNT FPYTIRTKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-521116714171NO APICAL MERISTEM PROTEIN
1ut4_B1e-521116714171NO APICAL MERISTEM PROTEIN
1ut7_A1e-521116714171NO APICAL MERISTEM PROTEIN
1ut7_B1e-521116714171NO APICAL MERISTEM PROTEIN
3swm_A1e-521116717174NAC domain-containing protein 19
3swm_B1e-521116717174NAC domain-containing protein 19
3swm_C1e-521116717174NAC domain-containing protein 19
3swm_D1e-521116717174NAC domain-containing protein 19
3swp_A1e-521116717174NAC domain-containing protein 19
3swp_B1e-521116717174NAC domain-containing protein 19
3swp_C1e-521116717174NAC domain-containing protein 19
3swp_D1e-521116717174NAC domain-containing protein 19
4dul_A1e-521116714171NAC domain-containing protein 19
4dul_B1e-521116714171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.329460.0cotyledon| hypocotyl| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}.
UniprotTISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G301500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6619140.0EU661914.1 Glycine max NAC domain protein (NAC14) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001238078.11e-173NAC domain-containing protein
RefseqXP_028214641.11e-173NAC domain-containing protein 83-like
SwissprotQ9FY931e-100NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0B2P6891e-172A0A0B2P689_GLYSO; NAC domain-containing protein 29
TrEMBLB2ZGQ71e-172B2ZGQ7_SOYBN; NAC domain protein
STRINGGLYMA18G53954.11e-172(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-100NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]