PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G288000.2.p
Common NameGLYMA_18G288000, LOC100784355
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WOX
Protein Properties Length: 267aa    MW: 30073.5 Da    PI: 5.6636
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G288000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.48.1e-2185145257
                          T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          r+R+t+++ ql++Le+ F + + +p++e+++e++++l    +++e++V++WFqNrRa+ k+
  Glyma.18G288000.2.p  85 RQRWTPSAMQLQILERIFDQgTGTPTKEKIKEITNELsqhgQISETNVYNWFQNRRARSKR 145
                          89*****************99**************************************97 PP
2Wus_type_Homeobox101.56.1e-3384147265
    Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                          +r+RWtP++ Q++iLe+++++G+ tP+ke+i++it+eL+++G+i+++NV++WFQNr+aR+++kq
  Glyma.18G288000.2.p  84 SRQRWTPSAMQLQILERIFDQGTGTPTKEKIKEITNELSQHGQISETNVYNWFQNRRARSKRKQ 147
                          689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-1779150IPR009057Homeodomain-like
PROSITE profilePS5007114.93381146IPR001356Homeobox domain
SMARTSM003891.0E-1383150IPR001356Homeobox domain
SuperFamilySSF466895.13E-1883148IPR009057Homeodomain-like
PfamPF000461.7E-1885145IPR001356Homeobox domain
CDDcd000863.34E-1385147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MVNVMEWQKQ RWQPNGNAEM MYVKVMTDEQ LETLRKQIAV YATICEQLIE MHKNISSHQD  60
LAGIRLGNMY CDPLLGSGGH KIASRQRWTP SAMQLQILER IFDQGTGTPT KEKIKEITNE  120
LSQHGQISET NVYNWFQNRR ARSKRKQQNV APSANAESEV ETEVDSKDKK TKPDEFQSPP  180
SVSAVPADDN LGFQNHGSLQ YLNPESNKPD SVFPSDASLR STRNFNHVPV FDGLLSNSTS  240
DYLTGKMEAP ENYDLYQPAG DFNMAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138146RRARSKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.235130.0cotyledon| pod| somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G288000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0957780.0BT095778.1 Soybean clone JCVI-FLGm-19J14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552686.10.0WUSCHEL-related homeobox 8
RefseqXP_014626346.10.0WUSCHEL-related homeobox 8
RefseqXP_028212796.10.0WUSCHEL-related homeobox 8-like
RefseqXP_028212797.10.0WUSCHEL-related homeobox 8-like
SwissprotO817883e-78WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLA0A445FYZ90.0A0A445FYZ9_GLYSO; WUSCHEL-related homeobox 13 isoform A
TrEMBLK7MVC20.0K7MVC2_SOYBN; Uncharacterized protein
STRINGGLYMA18G52491.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.11e-80WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]