PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G287200.1.p
Common NameGLYMA_18G287200, LOC100781134
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 176aa    MW: 19353.9 Da    PI: 9.0275
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G287200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00153961123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C++ F++   L  H  +H
  Glyma.18G287200.1.p 39 FECKTCNRQFPSFQALGGHRASH 61
                         89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.17E-837108No hitNo description
PfamPF139122.8E-133863IPR007087Zinc finger, C2H2
SMARTSM003550.163961IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8273966IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
PfamPF139126.1E-1085110IPR007087Zinc finger, C2H2
SMARTSM003550.586108IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.07886113IPR007087Zinc finger, C2H2
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MKREREVDSL TMANCLMLLS RGSEFEATYS STSMSNRVFE CKTCNRQFPS FQALGGHRAS  60
HKKPRLMAGD IEGQLLHDSP PKPKTHECSI CGLEFAIGQA LGGHMRRHRA ANLNGNVHNS  120
TATSSSSGGS SFDSSPKKKA DNKRVLVLDL NLTPFENDLE FLKIGKPTTF VDYLY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.269740.0flower| hypocotyl| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G287200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0912950.0BT091295.1 Soybean clone JCVI-FLGm-7L1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552680.11e-129zinc finger protein ZAT11
RefseqXP_028213105.11e-129zinc finger protein ZAT11-like
TrEMBLA0A445FYY01e-128A0A445FYY0_GLYSO; Zinc finger protein ZAT11
TrEMBLI1N5341e-128I1N534_SOYBN; Uncharacterized protein
STRINGGLYMA18G52410.11e-128(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-37C2H2 family protein