PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G281400.1.p
Common NameGLYMA_18G281400, Glyma18g51680.1, LOC100500531
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 243aa    MW: 27408.1 Da    PI: 9.147
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G281400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51.1e-2055105155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa a+++a++k++g
  Glyma.18G281400.1.p  55 PHYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEDAALAYDKAALKFKG 105
                          68********.**********94....45************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.7E-1455105IPR001471AP2/ERF domain
CDDcd000181.45E-3455114No hitNo description
SMARTSM003806.2E-3956119IPR001471AP2/ERF domain
PROSITE profilePS5103224.82956113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-3356114IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2256114IPR016177DNA-binding domain
PRINTSPR003678.9E-125768IPR001471AP2/ERF domain
PRINTSPR003678.9E-127995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MSEMVSALAQ VMGTTNRNPY MPQSTSFPFS TSVVKDQPQP YPSQPPPDQE VAKKPHYRGV  60
RQRPWGKWAA EIRDPKKAAR VWLGTFETAE DAALAYDKAA LKFKGTKAKL NFPERVHQDV  120
PFMQQHQQRS SNRNVFPIHA TSTTSSATGS VSSVDAVAPP SLSTHDQHGH QVFPNLYQYA  180
QILSSDDAQL PYFTSHLFNQ QQQQQQQQPF NSQFSSTFSS TSSYFYNQQQ QYDQQGHDHS  240
NH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2952117167ATERF1
3gcc_A1e-2952117167ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.365570.0cotyledon| meristem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G281400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310940.0KT031094.1 Glycine max clone HN_CCL_150 AP2-EREBP transcription factor (Glyma18g51680.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001339701.11e-178AP2-EREBP transcription factor
TrEMBLA0A0K2CSW01e-177A0A0K2CSW0_SOYBN; AP2-EREBP transcription factor (Fragment)
STRINGGLYMA18G51680.11e-178(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.11e-28ERF family protein
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]