PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G278100.2.p | ||||||||
Common Name | GLYMA_18G278100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | CO-like | ||||||||
Protein Properties | Length: 329aa MW: 36373.8 Da PI: 6.9719 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.4 | 1e-06 | 13 | 51 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg...Htv 39 r+C+++ + + + fC++ +lC++C + H + H++ Glyma.18G278100.2.p 13 RMCDTCRSVPSTVFCRSHTAFLCATCDTRLHVSltwHER 51 78**************************99977777875 PP | |||||||
2 | zf-B_box | 28.8 | 2.5e-09 | 52 | 97 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ + C+ + lC++C +H H +vp+ Glyma.18G278100.2.p 52 VWVCEACERAPAAFLCKADAASLCASCDADIHAAnplasrHHRVPI 97 689*****************************66889999777775 PP | |||||||
3 | CCT | 68.3 | 2e-23 | 259 | 302 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+k RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Glyma.18G278100.2.p 259 REARVLRYREKKKMRKFEKTIRYASRKAYAETRPRIKGRFAKRT 302 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 0.15 | 10 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.627 | 10 | 54 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.92E-6 | 13 | 54 | No hit | No description |
SMART | SM00336 | 1.5E-13 | 50 | 97 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.964 | 50 | 97 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.2E-7 | 51 | 97 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.29E-8 | 53 | 97 | No hit | No description |
PROSITE profile | PS51017 | 16.539 | 259 | 301 | IPR010402 | CCT domain |
Pfam | PF06203 | 3.0E-17 | 259 | 301 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MLEGQATTPT WPRMCDTCRS VPSTVFCRSH TAFLCATCDT RLHVSLTWHE RVWVCEACER 60 APAAFLCKAD AASLCASCDA DIHAANPLAS RHHRVPILPI AAANNNNNDD DDVADVDDED 120 ETASWLLLNP IKSATVPNTN NNNNNNGFLY NAAATTDHYA QHQHFAGVSQ KSYAGDSVVP 180 VQQHQHFQLG LEFDNSKPAF SYNGSVSQSV SVSSMDIGVV PESPMRDVSI AHTRPPKGTI 240 DLFSGPPIQV PSHFSPMDRE ARVLRYREKK KMRKFEKTIR YASRKAYAET RPRIKGRFAK 300 RTDVEAEVDQ MFSTTLITEV GYGIVPSF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 266 | 272 | REKKKMR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.64294 | 0.0 | cotyledon |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed throughout development. | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaves. Expressed at lower levels in stems, flowers and siliques. Not detected in roots. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Does not affect flowering time. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G278100.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ371244 | 0.0 | DQ371244.1 Glycine max CONSTANS-like 2b (COL2b) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028211793.1 | 0.0 | zinc finger protein CONSTANS-LIKE 2-like isoform X2 | ||||
Swissprot | Q96502 | 1e-115 | COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2 | ||||
TrEMBL | A0A0R0F5A6 | 0.0 | A0A0R0F5A6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G51320.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02380.1 | 1e-91 | CONSTANS-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G278100.2.p |
Publications ? help Back to Top | |||
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