PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G273400.1.p | ||||||||
Common Name | GLYMA_18G273400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 259aa MW: 29973.7 Da PI: 6.4043 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.7 | 1.5e-14 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd+ll ++v G g+W+++a++ g++R +k+c++rw +yl Glyma.18G273400.1.p 16 KGPWTGEEDKLLSEYVCFNGEGRWSSVAQCTGLKRNGKSCRLRWVNYL 63 79******************************9*************97 PP | |||||||
2 | Myb_DNA-binding | 43.8 | 5.9e-14 | 73 | 113 | 5 | 47 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 T+ E +++++++ +G++ W+tIa++++ gRt++++k++w+++ Glyma.18G273400.1.p 73 TPIEVGIIIELHAIFGNK-WSTIAKYLP-GRTDNDIKNYWRTH 113 66666789**********.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-19 | 11 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.055 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.74E-28 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-11 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-13 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.51E-8 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 21.138 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-22 | 67 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-12 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-12 | 70 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.26E-9 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MEAMMGSLAT EKEWRKGPWT GEEDKLLSEY VCFNGEGRWS SVAQCTGLKR NGKSCRLRWV 60 NYLRPGLKRG QLTPIEVGII IELHAIFGNK WSTIAKYLPG RTDNDIKNYW RTHFEKSGKS 120 KHKKLEMQKA KVLKQLKQKQ QPQEYDVKSI KSHEETKNET KSYETENNKQ KEVDFMCPTM 180 EHQYIVPSMH EGFSSTWPDT VLGDDGSWFS LWDFDDEPQC SADYVNQFSE SVVPNQATFG 240 VGEDSMQNHD KIFYFDDI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-22 | 16 | 116 | 27 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:19529828}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G273400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028212324.1 | 0.0 | transcription factor WER-like | ||||
Swissprot | Q9C9G7 | 1e-47 | MYB62_ARATH; Transcription factor MYB62 | ||||
TrEMBL | A0A0R0FDV0 | 0.0 | A0A0R0FDV0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G50891.1 | 1e-164 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30210.1 | 7e-63 | myb domain protein 121 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G273400.1.p |
Publications ? help Back to Top | |||
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