PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G263400.1.p | ||||||||
Common Name | GLYMA_18G263400, LOC100796679 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 521aa MW: 56559.8 Da PI: 7.9364 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.1 | 7.7e-33 | 227 | 284 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgse+prsYY+Ct+ +C vkkkver+ d++++ei+Y+g+Hnhek Glyma.18G263400.1.p 227 DDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCVVKKKVERAP-DGHITEIIYKGQHNHEK 284 8****************************************.***************85 PP | |||||||
2 | WRKY | 107.2 | 8e-34 | 406 | 464 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++dpk+v++tYeg+Hnh+ Glyma.18G263400.1.p 406 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHD 464 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.0E-28 | 218 | 286 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.606 | 221 | 285 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.23E-25 | 225 | 285 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.7E-36 | 226 | 284 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-24 | 227 | 283 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.4E-37 | 391 | 466 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.29E-29 | 398 | 466 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 39.192 | 401 | 466 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.6E-40 | 406 | 465 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-26 | 407 | 464 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 521 aa Download sequence Send to blast |
MYTPNADSGT APHPRPTITL PPRPSAEAFF SAAGGASPGP MTLVSSFFGS DAAADCRSFS 60 QLLAGAMASP MAFSAAAASA ADNSGKDDDG PHKGFKQSRP MNLVIARSPV FTVPPGLSPS 120 GFLNSPGFFS PQSPFGMSHQ QALAQVTAQA VLAQSHMHMQ ADYQMPSVTA PTEPPVQQLS 180 FALNEASEQQ VVSCVSEPRN AQLEAPELSQ ADKKYQPSSQ AIDKPADDGY NWRKYGQKQV 240 KGSEYPRSYY KCTHLNCVVK KKVERAPDGH ITEIIYKGQH NHEKPQANRR AKDNSDSNGN 300 VTVQPKSESN SQGWVGQLNK LSENIPNSSV PESDQTSNQG APRQLLPGSN ESEEVGIVDN 360 REEADDGEPN PKRRNTDVGV SEVPLSQKTV TEPKIIVQTR SEVDLLDDGY RWRKYGQKVV 420 KGNPHPRSYY KCTSAGCNVR KHVERASTDP KAVITTYEGK HNHDVPAARN SSHNTASSNS 480 MPLKPHNVVP EKHPLLKDKD FGGNDQRPVH LRLKEEQIIV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-40 | 227 | 467 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-40 | 227 | 467 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.50943 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G263400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU375355 | 0.0 | EU375355.1 Glycine max transcription factor (WRKY4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006602933.1 | 0.0 | probable WRKY transcription factor 3 | ||||
Swissprot | Q9ZQ70 | 1e-147 | WRKY3_ARATH; Probable WRKY transcription factor 3 | ||||
TrEMBL | I1N4H1 | 0.0 | I1N4H1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G49830.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1545 | 34 | 100 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 1e-126 | WRKY DNA-binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G263400.1.p |
Entrez Gene | 100796679 |
Publications ? help Back to Top | |||
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