PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G262800.1.p
Common NameGLYMA_18G262800, LOC100796159
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 414aa    MW: 46670.4 Da    PI: 4.2601
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G262800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-194191155
                  AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Glyma.18G262800.1.p 41 KKFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 91
                         589*******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.15E-324198No hitNo description
PROSITE profilePS5103219.5334299IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-1942100IPR016177DNA-binding domain
PfamPF008477.0E-144291IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-274298IPR001471AP2/ERF domain
SMARTSM003807.1E-3742105IPR001471AP2/ERF domain
PRINTSPR003676.1E-84354IPR001471AP2/ERF domain
PRINTSPR003676.1E-86581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MARKRKVTEA VEERNPCEAT MAWEEVMKEA AELGSARRLR KKFVGVRQRP SGRWVAEIKD  60
TIQKIRVWLG TFDTAEEAAR AYDEAACLLR GANTRTNFWP SSQSSSTPAL PSKITNLLLQ  120
RLKARNNNNN NNPCSLSSSS SSSSLFINHQ QKQLEDVCGT ESTFFSMDLF SDFLNDPEDY  180
STSNDEFSND SAQIDYITSS LESCLNGNDD CREKEKEMEM EFDFSSVTPT SSADVNSGGE  240
REEESEEATD LSAQDFQFLD NDVPPGYFYS PFEIAEDIEE QLEPENYGDE PSMLREVMKR  300
MKYERKFSAS LYAFNGIPEC LKLKLESGNT NGRGVSISNQ LTNLKMACSK NKNEANKKNE  360
EYIEAMDRKE EENPQTSIGM ECSSLSFSSR IDDDDGELLL WNSLDLPTLC FVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1342981471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G262800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552544.10.0ethylene-responsive transcription factor ERN1
TrEMBLK7MUV50.0K7MUV5_SOYBN; Uncharacterized protein
STRINGGLYMA18G49761.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-22related to AP2 11