PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G262000.1.p | ||||||||
Common Name | GLYMA_18G262000, LOC100792465 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 232aa MW: 26672.2 Da PI: 9.7073 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.3 | 6.4e-17 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++ Ed+ll d+v+++G g W++++++ g++R++k+c++rw++yl Glyma.18G262000.1.p 9 KGAWSQFEDDLLRDCVNLHGEGKWHLVPQRAGLNRCRKSCRLRWLNYL 56 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 44.3 | 4e-14 | 62 | 107 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg + ++E +l ++++k+lG++ W++Ia +++ gRt +++k++w+ y+ Glyma.18G262000.1.p 62 RGDFNEDEVDLMIRLHKLLGNR-WSLIAGRLP-GRTSNDVKNYWNAYM 107 7899******************.*********.************886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.926 | 4 | 56 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.99E-27 | 6 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-13 | 8 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 9 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-20 | 10 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.50E-8 | 11 | 56 | No hit | No description |
PROSITE profile | PS51294 | 23.963 | 57 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-13 | 61 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-12 | 62 | 106 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-22 | 64 | 111 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.54E-8 | 65 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MEGSSGVRKG AWSQFEDDLL RDCVNLHGEG KWHLVPQRAG LNRCRKSCRL RWLNYLKPNI 60 KRGDFNEDEV DLMIRLHKLL GNRWSLIAGR LPGRTSNDVK NYWNAYMRRK VHSHNKDNKI 120 KKQETKSTVK PHEVIKPIPR VLTKTSPWLQ RKFINSPKVG VSEEGATSSE NWWETLLADK 180 EDNAVFNNNN NTCFFGGVHG ELNLWNEELT SIDFDFVTQG ELGGIVNFQN P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-22 | 3 | 113 | 1 | 110 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G262000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB934280 | 1e-47 | AB934280.1 Glycine max gene for MYB transcription factor, complete cds, allele: R, cultivar: Clark. | |||
GenBank | AB934281 | 1e-47 | AB934281.1 Glycine max gene for MYB transcription factor, complete cds, allele: r-m. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006602928.1 | 1e-172 | transcription factor MYB114 | ||||
Swissprot | Q9FNV9 | 2e-54 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | I1N4F9 | 1e-170 | I1N4F9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G49690.1 | 1e-171 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 1e-56 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G262000.1.p |
Entrez Gene | 100792465 |
Publications ? help Back to Top | |||
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