PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G259300.1.p
Common NameGLYMA_18G259300, LOC100786999
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 339aa    MW: 36497.5 Da    PI: 7.5832
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G259300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.53.2e-3366122358
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                           v+YkeClkNhAa+lGg a+DGCgEfmps++++ ++++++kCaACgCHRnFHRre+e
  Glyma.18G259300.1.p  66 VVTYKECLKNHAANLGGLALDGCGEFMPSPTATaADPSSIKCAACGCHRNFHRREPE 122
                          689***************************99999*******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.9E-2767121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2267120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.0E-2968120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.15369120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.2E-19192261IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-30193262IPR009057Homeodomain-like
TIGRFAMsTIGR015656.5E-27200257IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDITPTTTII NTTTTPSAAK SPEHETETPT RITTPITPTT TKTLSFSNGV LKRHHHHHLH  60
HPMPAVVTYK ECLKNHAANL GGLALDGCGE FMPSPTATAA DPSSIKCAAC GCHRNFHRRE  120
PEDPPITSNT THVIEYQPHH RHHPPPPLHA AAAARSPNSA SPPPISSSYY PSAPHMLLAL  180
SAGLAAPPES TAAPSAALSR KRFRTKFSQE QKEKMHKFAE KVGWKIQKRD EDLIHEFCNE  240
VGVDRSVLKV WMHNNKNTFA KKDNNIVISN DINITTSNNI NTSIIDDNDA NGGDVKVFEN  300
PNNNHGSGSG GGEDPAEDPS RNHYGGVNVG ANGSSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-221992581675ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.293460.0hypocotyl| root| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G259300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006602909.10.0zinc-finger homeodomain protein 9
SwissprotQ9LXG03e-77ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLI1N4D20.0I1N4D2_SOYBN; Uncharacterized protein
STRINGGLYMA18G49390.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.16e-31zinc finger homeodomain 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]