PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.18G258700.1.p

Common Name

GLYMA_18G258700, Glyma18g49320.1, LOC100784537

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 93aa MW: 10433.8 Da PI: 10.1051

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.18G258700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.4	1.1e-07	22	58	18	54
HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + ++Lr+l+P+ + + +s K+s + +L+++++YI+ L Glyma.18G258700.1.p 22 ELVSKLRQLVPEiR-NRRSDKVSASKVLQETCNYIRGL 58 56689*****77.89*****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.855	4	58	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.95E-9	18	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-8	18	74	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.5E-5	22	58	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
MSSRRSRQHS GSTRISDDQI IELVSKLRQL VPEIRNRRSD KVSASKVLQE TCNYIRGLHR 60 EVSDLSERLS QLLTTIDADS AEAGIIRSLL NQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	27	37	RQLVPEIRNRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.3790	1e-157	root

Functional Description ? help Back to Top
Source	Description
UniProt	Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269\|PubMed:16527868}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.18G258700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT094878	1e-155	BT094878.1 Soybean clone JCVI-FLGm-6I10 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001241066.1	1e-58	transcription factor bHLH135-like
Refseq	XP_028213411.1	1e-58	transcription factor PRE6-like
Swissprot	Q9LJX1	7e-41	PRE5_ARATH; Transcription factor PRE5
TrEMBL	A0A445FY93	3e-57	A0A445FY93_GLYSO; Transcription factor PRE5
TrEMBL	C6TBH0	3e-57	C6TBH0_SOYBN; BHLH transcription factor
STRING	GLYMA18G49320.1	4e-58	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF567	34	143
Representative plant	OGRP1877	12	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28857.1	3e-43	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.18G258700.1.p
Entrez Gene	100784537

Publications ? help Back to Top
Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]