PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G256500.1.p
Common NameGLYMA_18G256500, LOC100780402
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 542aa    MW: 59177.4 Da    PI: 7.6082
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G256500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.5e-30191250159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+
  Glyma.18G256500.1.p 191 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApTCPVRKQVQRCAEDLSILITTYEGTHNHP 250
                          58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-31177250IPR003657WRKY domain
SuperFamilySSF1182908.37E-27184251IPR003657WRKY domain
PROSITE profilePS5081127.014186252IPR003657WRKY domain
SMARTSM007744.5E-36191251IPR003657WRKY domain
PfamPF031061.1E-26192250IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MSKMSSPNGP EIEEKRVTKE DKFKSAKTEM GEVKEENERL KMMLERVEKD YHSLQLRFFD  60
ILHKDVSKKG LAVSSTSLDH ETAEPELVSL CLGRSPMEPK KELARIGYSN KPKEEDVGPN  120
LTLGLDSKHL LSMEVVSDLS PTNSSEEPKE VEAEGTNQSA KVINVNDDVS DQMPAKRARV  180
SVRARCDTPT MNDGCQWRKY GQKIAKGNPC PRAYYRCTVA PTCPVRKQVQ RCAEDLSILI  240
TTYEGTHNHP LAVSATAMAS TTSAAASMLL SGSSTSHLTS HNSASFGNAP TTLLNGVSFS  300
HQFDELRAKQ MLSPPNHVSP NLFSTITLDM TSSASNSSSS TQFHHRLPST IASISNPKFS  360
PASLSFCSQD NNFIPSIWGK GGDTSTTPID KIPMTRPVIK GNQYFQENFY QQSITKQTPS  420
KEALAETITK AISTDPSLRS VIAAAVSSIV GNGSSSGNQE ESDNVLGSGL NLKLGEHFQL  480
ASPNPLNQNR KECLTSYFKS LSSKNSEAGS FIFLQPPLPF SFSKSSTNQV NHYVQEMNSH  540
H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-19178251173WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G256500.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551724.10.0probable WRKY transcription factor 72
TrEMBLK7MUR00.0K7MUR0_SOYBN; Uncharacterized protein
STRINGGLYMA18G49140.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.14e-66WRKY DNA-binding protein 72