PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G253800.2.p
Common NameGLYMA_18G253800, LOC100819624
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 290aa    MW: 31981.8 Da    PI: 7.1927
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G253800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.8e-19127181256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ ++tkeq  +Lee F+++++++ ++++ LA++l+L+ rqV vWFqNrRa+ k
  Glyma.18G253800.2.p 127 RKKLRLTKEQSMVLEETFKEHNTLNPKRKQALAEELNLKPRQVEVWFQNRRARTK 181
                          788899***********************************************98 PP
2HD-ZIP_I/II127.36.5e-41127216191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rl+keq+ +LEe+F+e+++L+p+rK++la+eL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+kev+eLr +
  Glyma.18G253800.2.p 127 RKKLRLTKEQSMVLEETFKEHNTLNPKRKQALAEELNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCENLTEENRRLHKEVQELR-A 215
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 l 91 
                          l
  Glyma.18G253800.2.p 216 L 216
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046182.5E-15197IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.604.3E-20110177IPR009057Homeodomain-like
SuperFamilySSF466892.61E-19114184IPR009057Homeodomain-like
PROSITE profilePS5007117.799123183IPR001356Homeobox domain
SMARTSM003892.0E-16125187IPR001356Homeobox domain
PfamPF000461.5E-16127181IPR001356Homeobox domain
CDDcd000863.38E-17127184No hitNo description
PROSITE patternPS000270158181IPR017970Homeobox, conserved site
SMARTSM003409.8E-27183226IPR003106Leucine zipper, homeobox-associated
PfamPF021836.4E-11183217IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGEKDDEFGL SLSLSLGGVN QQQQPPSLNH MHQPQQQQPV PMNHNKTLFG DLFQLPDRSS  60
DMVRGIDVNS AAEYDGVSSP NSAVSSVSGG GKQSERDDDN AAAVAGERTS CSRGSDDDDG  120
GGSDAARKKL RLTKEQSMVL EETFKEHNTL NPKRKQALAE ELNLKPRQVE VWFQNRRART  180
KLKQTEVDCE YLKKCCENLT EENRRLHKEV QELRALKLSP QMYMHMNPPT TLTMCPSCER  240
THSSASSSPA TIHSTVAAAT SSNCKLLGAN IRRPVPVNTW PFEGPIPRP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175183RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.620030.0somatic embryo| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G253800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358921e-118AC235892.2 Glycine max clone GM_WBc0089E01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552501.10.0homeobox-leucine zipper protein HAT3 isoform X2
RefseqXP_028213206.10.0homeobox-leucine zipper protein HAT3-like isoform X2
SwissprotP466021e-85HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A445FXL90.0A0A445FXL9_GLYSO; Homeobox-leucine zipper protein HAT3
TrEMBLI1N4880.0I1N488_SOYBN; Uncharacterized protein
STRINGGLYMA18G48880.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.12e-68homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]