PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G253800.1.p
Common NameGLYMA_18G253800, LOC100819624
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 291aa    MW: 32052.8 Da    PI: 7.1927
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G253800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.9e-19128182256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ ++tkeq  +Lee F+++++++ ++++ LA++l+L+ rqV vWFqNrRa+ k
  Glyma.18G253800.1.p 128 RKKLRLTKEQSMVLEETFKEHNTLNPKRKQALAEELNLKPRQVEVWFQNRRARTK 182
                          788899***********************************************98 PP
2HD-ZIP_I/II127.36.5e-41128217191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rl+keq+ +LEe+F+e+++L+p+rK++la+eL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+kev+eLr +
  Glyma.18G253800.1.p 128 RKKLRLTKEQSMVLEETFKEHNTLNPKRKQALAEELNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCENLTEENRRLHKEVQELR-A 216
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 l 91 
                          l
  Glyma.18G253800.1.p 217 L 217
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.1E-15198IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.604.3E-20111178IPR009057Homeodomain-like
SuperFamilySSF466892.65E-19115185IPR009057Homeodomain-like
PROSITE profilePS5007117.799124184IPR001356Homeobox domain
SMARTSM003892.0E-16126188IPR001356Homeobox domain
PfamPF000461.5E-16128182IPR001356Homeobox domain
CDDcd000863.06E-17128185No hitNo description
PROSITE patternPS000270159182IPR017970Homeobox, conserved site
SMARTSM003409.8E-27184227IPR003106Leucine zipper, homeobox-associated
PfamPF021836.5E-11184218IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGEKDDEFGL SLSLSLGGVN QQQQPPSLNH MHQPQQQQPV PMNHNKTLFG DLFQLPADRS  60
SDMVRGIDVN SAAEYDGVSS PNSAVSSVSG GGKQSERDDD NAAAVAGERT SCSRGSDDDD  120
GGGSDAARKK LRLTKEQSMV LEETFKEHNT LNPKRKQALA EELNLKPRQV EVWFQNRRAR  180
TKLKQTEVDC EYLKKCCENL TEENRRLHKE VQELRALKLS PQMYMHMNPP TTLTMCPSCE  240
RTHSSASSSP ATIHSTVAAA TSSNCKLLGA NIRRPVPVNT WPFEGPIPRP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176184RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.620030.0somatic embryo| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G253800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358921e-118AC235892.2 Glycine max clone GM_WBc0089E01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006602886.10.0homeobox-leucine zipper protein HAT3 isoform X1
RefseqXP_028213205.10.0homeobox-leucine zipper protein HAT3-like isoform X1
SwissprotP466022e-84HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A0R0F4D30.0A0A0R0F4D3_SOYBN; Uncharacterized protein
STRINGGLYMA18G48880.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Representative plantOGRP19616156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.17e-68homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]