PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G252300.1.p | ||||||||
Common Name | EREBP1, GLYMA_18G252300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 203aa MW: 22467.1 Da PI: 7.5998 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.3 | 6.1e-21 | 76 | 126 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp++ng +r++lg+++t+e+Aa a+++a+ k++g Glyma.18G252300.1.p 76 HYRGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYDTEEKAALAYDKAAFKMRG 126 8********.***********9998..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.10.180.10 | 9.7E-5 | 22 | 88 | IPR029068 | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |
CDD | cd00018 | 9.77E-32 | 75 | 136 | No hit | No description |
PROSITE profile | PS51032 | 24.474 | 76 | 134 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-15 | 76 | 126 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-39 | 76 | 140 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-24 | 76 | 135 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.6E-13 | 77 | 88 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-33 | 89 | 135 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-13 | 116 | 136 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MVSATVDSDF AFLESVQQYL LGHDSINLMS ETHQAASHDP FSDPNKCDGD SGNIAFRSED 60 ATAVVARDHA PPTWKHYRGV RRRPWGKFAA EIRDPKKNGA RVWLGTYDTE EKAALAYDKA 120 AFKMRGQKAK LNFPHLIDSD NSDELSEPVM MTTSKRSLLE ISSPSSSCSD DSSESQGTKR 180 RKSLAELLNK LAKNRSQVKV EC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-32 | 75 | 139 | 4 | 68 | ATERF1 |
3gcc_A | 6e-32 | 75 | 139 | 4 | 68 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.68 | 0.0 | cotyledon| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and at low levels in buds and leaves. Not expressed in cell culture. {ECO:0000269|PubMed:7756828}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G252300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF357211 | 0.0 | AF357211.1 Glycine max ethylene-responsive element binding protein 1 (EREBP1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001237801.1 | 1e-151 | ethylene-responsive element binding protein 1 | ||||
Refseq | XP_028213004.1 | 1e-151 | ethylene-responsive transcription factor 2-like | ||||
Swissprot | Q40479 | 9e-38 | ERF2_TOBAC; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | A0A445FW74 | 1e-149 | A0A445FW74_GLYSO; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | Q8LLR3 | 1e-149 | Q8LLR3_SOYBN; Ethylene-responsive element binding protein 1 | ||||
STRING | GLYMA18G48730.1 | 1e-150 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF512 | 33 | 157 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 3e-36 | ethylene-responsive element binding factor 13 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G252300.1.p |
Entrez Gene | 548037 |
Publications ? help Back to Top | |||
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