PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G252200.1.p
Common NameGLYMA_18G252200, LOC100819961
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 165aa    MW: 18170.2 Da    PI: 7.0915
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G252200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.6e-1851101155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++ykGVr++   g+++AeI dp++n    r++lg+++t+eeAa a+++a+ k++g
  Glyma.18G252200.1.p  51 TRYKGVRRRA-HGKFAAEITDPNKN---GRVWLGTYDTEEEAALAYDNAAFKIRG 101
                          68*****887.8*********9665...7************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.8E-1451101IPR001471AP2/ERF domain
CDDcd000186.18E-2951111No hitNo description
Gene3DG3DSA:3.30.730.103.4E-2852110IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2052110IPR016177DNA-binding domain
SMARTSM003805.5E-3252115IPR001471AP2/ERF domain
PROSITE profilePS5103221.87852109IPR001471AP2/ERF domain
PRINTSPR003671.9E-75364IPR001471AP2/ERF domain
PRINTSPR003671.9E-77591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MDNYYDATTA TTESDMTLSD LIQHYMHDDE ANALNNNVEG AKAQKEVPKW TRYKGVRRRA  60
HGKFAAEITD PNKNGRVWLG TYDTEEEAAL AYDNAAFKIR GSKSKLNFPH LIPPKLPLDA  120
SIASSQMSDP PSSSSTFEDG LEGSKKTKGI AGLLNKLAHE RNRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2253109360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-2253109663ATERF1
3gcc_A1e-2253109663ATERF1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and at low levels in buds and leaves. Not expressed in cell culture. {ECO:0000269|PubMed:7756828}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G252200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150378e-73AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551715.11e-120ethylene-responsive transcription factor 2
SwissprotQ404793e-28ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLK7MUN21e-119K7MUN2_SOYBN; Uncharacterized protein
STRINGGLYMA18G48721.11e-119(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2122744
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.17e-29ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]