PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G246000.1.p
Common NameGLYMA_18G246000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 305aa    MW: 34189.8 Da    PI: 6.9455
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G246000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.7e-10161208355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + h ++Er+RR+++  ++  L   +P +     k+++Ka +L++Av+Y k+Lq
  Glyma.18G246000.1.p 161 QHHIIAERKRRQELTGSIIALAATIPGL-----KRMDKAYVLREAVNYTKQLQ 208
                          6799************************.....89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.497158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-7161208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-14161224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.53E-8161212No hitNo description
Gene3DG3DSA:4.10.280.103.5E-13162219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-10164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEDSLENWIS LLEMEEYHDG SFDEEEFLRE ILKEEQQPEN LWPQRDQKLS NTSPTVSFDE  60
AISFCGSGTL HKSNSSNSIK SLKRSSSSVS PATTTYLLSF DTSSAKPITL KPSPKLDLAL  120
GSSNKRSTST VTVVKDGCEF EPLMMPQSQA RKKVRRSCET QHHIIAERKR RQELTGSIIA  180
LAATIPGLKR MDKAYVLREA VNYTKQLQER VKELENQNKV DSATFIRKSQ ASSHCETNKE  240
ISLFEVEARV LDEEVLIGIH CEKQKDIVFK IHALLGKLHL STTSSTVLPF GTSTLIINII  300
AQMN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150170RKKVRRSCETQHHIIAERKRR
2166171ERKRRQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.185751e-142flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G246000.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150372e-34AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006603576.10.0transcription factor NAI1
TrEMBLA0A0R0FCR40.0A0A0R0FCR4_SOYBN; Uncharacterized protein
STRINGGLYMA18G48126.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149471112
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-35bHLH family protein