PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G242000.1.p
Common NameGLYMA_18G242000, LOC100800211
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 745aa    MW: 81880.8 Da    PI: 6.3365
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G242000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.11.6e-32263319259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ d++++ei+Y+g Hnh 
  Glyma.18G242000.1.p 263 EDGYNWRKYGQKQVKGSEYPRSYYKCTQPNCQVKKKVERSH-DGQITEIIYKGAHNHA 319
                          7****************************************.***************7 PP
2WRKY101.45.4e-32477535159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver++++ k+v +tYeg+Hnhe
  Glyma.18G242000.1.p 477 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSTGCMVRKHVERASHNLKYVLTTYEGKHNHE 535
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-29249321IPR003657WRKY domain
PROSITE profilePS5081123.961257321IPR003657WRKY domain
SuperFamilySSF1182903.53E-25259321IPR003657WRKY domain
SMARTSM007742.6E-36262320IPR003657WRKY domain
PfamPF031066.5E-25263318IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.1E-35462537IPR003657WRKY domain
SuperFamilySSF1182906.41E-28470537IPR003657WRKY domain
PROSITE profilePS5081137.149472537IPR003657WRKY domain
SMARTSM007743.3E-37477536IPR003657WRKY domain
PfamPF031062.3E-24478535IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MEQDNLNNNC DEENFVSDSR GRKRSIAERR GFNSNAARIN TALFRTATTS TTTPSPSPAV  60
RSPRLTIPPG ISPTALLDSP IMLPNSQAIS PTVGSFFTLP LLSHEGSMLT TEQGNVDVST  120
AFDVAASFKF KPRGHLDPNP LPPFPASLNQ VSSHFHSVKG ENRESHLLAQ VQPPLDFSCQ  180
ADFSKGHSVK NSEVNSYNDM KMVNDAIVNA NNVEMPMSGS EEVSDESAML KNAINGEDFG  240
GQPASEGEQK EVSHATGAVR TSEDGYNWRK YGQKQVKGSE YPRSYYKCTQ PNCQVKKKVE  300
RSHDGQITEI IYKGAHNHAQ PHPGHRASSL STDEVSDMAE DSTLAKIEGG YVWRNIQTGL  360
KDTKQSFDWK ADGQERTSST SAVTELSDPI STNKAKSLRI FELEDTPELS STLASHDDDE  420
DGTAHALVSA EDEAENDELE PKIRKKESYA VEPNLPPTRA VREPRVVVQI ESDVDILDDG  480
YRWRKYGQKV VKGNPNPRSY YKCTSTGCMV RKHVERASHN LKYVLTTYEG KHNHEVPTAR  540
TNNQVNSSDG GLPPNGANGQ VSLTLPGNAG IPKPETHQTL GHHFDRKPEF SDEFLRPSLV  600
GSFGNDMKFR PSSLCQMKYP SLNNAMPYGS YGLNPERCTA PQAGSIPSMF PDFPMPLPLN  660
LPSSGNFSIA GLNFNRVKPM NPDQSFLSGQ QVKDIDTGFL RPKQEQKDDT MYGSCMPPLD  720
HANASLTSSP SPSIYQRVMH NFPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-32241537177Probable WRKY transcription factor 4
2lex_A6e-32241537177Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G242000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014625783.10.0WRKY transcription factor SUSIBA2 isoform X1
TrEMBLK7MUG90.0K7MUG9_SOYBN; Uncharacterized protein
STRINGGLYMA18G47741.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83493445
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.12e-96WRKY DNA-binding protein 2