PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G238200.1.p
Common NameGLYMA_18G238200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 352aa    MW: 38102.9 Da    PI: 5.94
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G238200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.6e-31160218259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp+++++tY+ eHnh+
  Glyma.18G238200.1.p 160 SDIWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNRSDPTMFIVTYTAEHNHP 218
                          79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-30152220IPR003657WRKY domain
PROSITE profilePS5081134.67154220IPR003657WRKY domain
SuperFamilySSF1182905.36E-26157220IPR003657WRKY domain
SMARTSM007741.4E-36159219IPR003657WRKY domain
PfamPF031061.1E-25161218IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAEDWDLHAV VRGCSTVTSS SVSSSSSPSS SGFASSYFHP EAAVSSSSSS YSGFNIFKGE  60
QGISQVLSLS AYPFEARSSI EELHELCKPF FSKSQPLTLQ ASSPLSSLSS YSSAPPKSVS  120
TQEKQQQRSK QAHAVTTPRS KRRKNQLKKV CQVPVENLSS DIWAWRKYGQ KPIKGSPYPR  180
GYYRCSSSKG CLARKQVERN RSDPTMFIVT YTAEHNHPAP THRNSLAGST RQKPLVPQTA  240
TTTEEDSDKS KSLTKPTSPA TSGAEEEAPT PSQGEKSESR EEKEDVMDDE EEDEFGLSDM  300
VLSDDFFESL DELSQLTAPS VVTGDCFSDP FSAIAIPSWV ASGAATASGC R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-22146221480Disease resistance protein RRS1
5w3x_D2e-22146221480Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.235560.0pod| seed coat| somatic embryo| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G238200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced after flagellin treatment. {ECO:0000269|PubMed:11875555}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0932950.0BT093295.1 Soybean clone JCVI-FLGm-17I1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237508.20.0WRKY transcription factor 10
RefseqXP_028215575.10.0WRKY transcription factor 22-like
SwissprotO046095e-83WRK22_ARATH; WRKY transcription factor 22
TrEMBLA0A0R4J5X00.0A0A0R4J5X0_SOYBN; Uncharacterized protein
TrEMBLA0A445FX800.0A0A445FX80_GLYSO; WRKY transcription factor 22
STRINGGLYMA18G47300.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.14e-68WRKY family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  3. Gkizi D, et al.
    The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae.
    Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23
    [PMID:26780421]
  4. Kloth KJ, et al.
    AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling.
    J. Exp. Bot., 2016. 67(11): p. 3383-96
    [PMID:27107291]
  5. Camborde L, et al.
    Detection of nucleic acid-protein interactions in plant leaves using fluorescence lifetime imaging microscopy.
    Nat Protoc, 2017. 12(9): p. 1933-1950
    [PMID:28837131]
  6. Wang S, et al.
    Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322
    [PMID:29090631]