PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G234900.4.p
Common NameGLYMA_18G234900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 650aa    MW: 73472.5 Da    PI: 5.7039
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G234900.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.9e-08542590247
                          SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                          g+WT++E+++++d+vk  +       W+   +t++ ++++++++s+++++
  Glyma.18G234900.4.p 542 GSWTEQEEKKFKDVVKSNPASldkcFWDHLFKTFP-KKSREDLVSYYFNV 590
                          79*****************99**************.9**********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5101117.004165IPR001606ARID DNA-binding domain
SMARTSM005011.3E-4166IPR001606ARID DNA-binding domain
Gene3DG3DSA:1.10.150.601.3E-12471IPR001606ARID DNA-binding domain
PfamPF013881.3E-7459IPR001606ARID DNA-binding domain
SuperFamilySSF467741.44E-14473IPR001606ARID DNA-binding domain
PROSITE profilePS511568.616441565IPR000949ELM2 domain
SMARTSM011890.0044443495IPR000949ELM2 domain
SMARTSM007170.0074540593IPR001005SANT/Myb domain
CDDcd001678.93E-4543591No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MMSNGDPLDL YKLFMVVKEK GGYDAVCKNK LWDLVGEEYG LGVKVGSSAE LVYSKHLSSL  60
EACLKNATDG KFPECGLIDD RVKFHKHLME AQAESLLDDS GEEEAGDELE RIVCDCKDGR  120
KLCGSNRVKY VKPESNVAEL ERVYEYLDET KSCVSDSVKG KKSDSNGDEF DNVCDFLDGR  180
ELCDTNRVKG VSPESNGDKK VQSKGLVDLD MLDNGTDEHI IRNLCSLNTE RNILEEFDGG  240
KILTVDASDA ESNMPRLSDG SKCCDNDDDD DSDEVLILDP SGVDKEIFGR KRKRESKSEM  300
LSWITSIAKN PCDSTVGSIP EKSKWKFYSS QEIWKQVLLF REAVFLKKDF ETTSEQLNWQ  360
KMHPSMYDDR VGAMYNLRQR LKCDKRVLLG KTTSGGVSLA SSGGTHVDLE RTPSSHAEDR  420
AEKLLPDSGT AHSSLDRCAR VHIPLGPNHQ AEVPEWTVIT YEVDSKWLGT QIWPPKTVNS  480
KCRLFERDPI GEGRQNSCGC QVQGSVECVR FHIAKRRAKV KLELGEAFHQ WNLHKVGEEV  540
GGSWTEQEEK KFKDVVKSNP ASLDKCFWDH LFKTFPKKSR EDLVSYYFNV FLLQRRAYQN  600
RHTPDNIDSD DDESEFTPLR KVFGHQTPKP RSFTLLSPKK ATFKRENNK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G234900.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006602810.10.0AT-rich interactive domain-containing protein 1
RefseqXP_006602811.10.0AT-rich interactive domain-containing protein 1
RefseqXP_025982496.10.0AT-rich interactive domain-containing protein 1
RefseqXP_028214578.10.0AT-rich interactive domain-containing protein 1-like
RefseqXP_028214579.10.0AT-rich interactive domain-containing protein 1-like
TrEMBLA0A0R0FCB40.0A0A0R0FCB4_SOYBN; Uncharacterized protein
STRINGGLYMA18G46951.10.0(Glycine max)