PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G230600.1.p | ||||||||
Common Name | GLYMA_18G230600, LOC100800408 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 317aa MW: 35239.1 Da PI: 7.5779 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.6 | 4.4e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l ++k+ Gg+ +W++ +r+ g+ R++k+c++rw +yl Glyma.18G230600.1.p 14 KGPWTAEEDEILSSYIKKNGGHgSWRSLPRMAGLLRCGKSCRLRWTNYL 62 79*******************9***********99************97 PP | |||||||
2 | Myb_DNA-binding | 48 | 2.9e-15 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE++l ++++ lG++ W++Ia+ ++ gRt++++k+ w+++l Glyma.18G230600.1.p 68 RGPFTLEEEKLVIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 113 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-22 | 5 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.648 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.11E-28 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.41E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 24.539 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-25 | 66 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-14 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-14 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.58E-10 | 70 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MGRTPCCDKK GLKKGPWTAE EDEILSSYIK KNGGHGSWRS LPRMAGLLRC GKSCRLRWTN 60 YLRPDIKRGP FTLEEEKLVI QLHGILGNRW AAIASQLPGR TDNEIKNLWN THLKKRLKSM 120 GLDPKTHEPL ASSTYPFHKA PASVSTRHMA QWESARLEAE ARLSNESSRF SHNTTNNSNS 180 DNNKTTDSDY FLRIWNSEVG EAFRNVHHHK ADDDNNNNKI TTNTPTSSCH SPLSTGSSSN 240 KCESIATNAD LASNAPEIIT PSSIVKQEFE WGTRGSDSSS SNDMEDSSDT ALQLLLDFPI 300 NNDMSFLEGN SFVCPL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-26 | 12 | 117 | 5 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 118 | LKKRLKS |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G230600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-121 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003552382.1 | 0.0 | transcription factor MYB41 | ||||
Refseq | XP_028213721.1 | 0.0 | transcription factor MYB41-like | ||||
Swissprot | Q9M2D9 | 1e-121 | MYB17_ARATH; Transcription factor MYB17 | ||||
TrEMBL | A0A0B2NV94 | 0.0 | A0A0B2NV94_GLYSO; Myb-related protein Pp2 | ||||
TrEMBL | A0A0R0FBM8 | 0.0 | A0A0R0FBM8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G46480.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2331 | 32 | 80 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61250.1 | 1e-112 | myb domain protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G230600.1.p |
Entrez Gene | 100800408 |