PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G225800.2.p | ||||||||
Common Name | GLYMA_18G225800, LOC100787537 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 823aa MW: 89779.7 Da PI: 6.2157 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.1 | 4.7e-21 | 125 | 180 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+++l+L++rqVk+WFqNrR+++k Glyma.18G225800.2.p 125 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSRRLNLETRQVKFWFQNRRTQMK 180 688999***********************************************999 PP | |||||||
2 | START | 203.6 | 8e-64 | 339 | 563 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 ela++a++elvk+a+ +ep+W +s e++n +e+++++++ + + +ea+r +g+v+ ++ lve+l+d++ +W+e+++ Glyma.18G225800.2.p 339 ELALAAMDELVKMAQTGEPLWIRSLeggrEILNHEEYTRTITPCIGlrpngFVTEASRQTGMVIINSLALVETLMDSN-RWSEMFPcmia 427 5899*************************************999989***9***************************.*********** PP EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS START 78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160 + +t evis+g galqlm aelq+lsplvp R++ f+R+++q+ +g w++vdvS+d ++ + + +v +++lpSg+++++++ng Glyma.18G225800.2.p 428 RTSTAEVISNGingtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGLWAVVDVSIDTIRETSGAPTFVNCRRLPSGCVVQDMPNG 517 *****************************************************************999********************** PP EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +skvtwveh++++++++h+l+r+l++sg+ +ga++wv tlqrqce+ Glyma.18G225800.2.p 518 YSKVTWVEHAEYDESQIHQLFRPLLSSGMGFGAQRWVTTLQRQCEC 563 ********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.88E-21 | 108 | 182 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.0E-22 | 115 | 182 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.783 | 122 | 182 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.4E-19 | 123 | 186 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.52E-19 | 124 | 182 | No hit | No description |
Pfam | PF00046 | 1.1E-18 | 125 | 180 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 157 | 180 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 44.843 | 330 | 566 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.86E-34 | 332 | 563 | No hit | No description |
CDD | cd08875 | 3.30E-124 | 334 | 562 | No hit | No description |
Pfam | PF01852 | 4.3E-55 | 339 | 563 | IPR002913 | START domain |
SMART | SM00234 | 3.9E-46 | 339 | 563 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.03E-23 | 591 | 815 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 823 aa Download sequence Send to blast |
MSFGGFLETK QSDGGGGRIV VSDIPYNSNN GSNHSNDIMP SGAISLPRLA TPTLAKSMFN 60 SPGLSLALQS DIDGQGDMNR LMPENFEQNG LRRSREEEHE SRSGSDNMDG GSGDDFDAAD 120 NPPRKKRYHR HTPQQIQELE SLFKECPHPD EKQRLELSRR LNLETRQVKF WFQNRRTQMK 180 TQLERHENSL LRQENDKLRA ENMSMREAMR NPICSNCGGP AMIGEISLEE QHLRIENARL 240 KDELDRVCAL AGKFLGRPVS SLTSSIGPPM PNSSLELGVG SNGFGQGLST VPSTMPDFGV 300 GISSPLAMVS PSSTRPTTTA LVTPSGFDNR SIERSIVLEL ALAAMDELVK MAQTGEPLWI 360 RSLEGGREIL NHEEYTRTIT PCIGLRPNGF VTEASRQTGM VIINSLALVE TLMDSNRWSE 420 MFPCMIARTS TAEVISNGIN GTRNGALQLM HAELQVLSPL VPVREVNFLR FCKQHAEGLW 480 AVVDVSIDTI RETSGAPTFV NCRRLPSGCV VQDMPNGYSK VTWVEHAEYD ESQIHQLFRP 540 LLSSGMGFGA QRWVTTLQRQ CECLAILMSS AAPSREHSAI SSGGRRSMLK LAHRMTNNFC 600 SGVCASTVHK WNKLNAGNVG EDVRVMTRKS VDDPGEPPGI VLSAATSVWL PVSSQRLFDF 660 LRDERLRSEW DILSNGGPMQ EMAHIAKGQD HANCVSLLRA SAINANQSSM LILQETCTDA 720 SGSLVVYAPV DIPAMHVVMN GGDSAYVALL PSGFAIVPDG SGEEQGGASQ QRAASGCLLT 780 VAFQILVNSL PTAKLTVESV ETVNNLISCT VQKIKSALHC ES* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.45898 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G225800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031166 | 0.0 | KT031166.1 Glycine max clone HN_CCL_121 homeodomain/HOMEOBOX transcription factor (Glyma09g40130.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003552359.1 | 0.0 | homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
Refseq | XP_006602766.1 | 0.0 | homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
Refseq | XP_014626485.1 | 0.0 | homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | K7MU39 | 0.0 | K7MU39_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G45970.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G225800.2.p |
Entrez Gene | 100787537 |
Publications ? help Back to Top | |||
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