PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G204900.2.p
Common NameGLYMA_18G204900, LOC100802192
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 361aa    MW: 40589.9 Da    PI: 6.7408
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G204900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.72.4e-3267120255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          prlrWtp+LH rFv+av++LGG+e+AtPk +l+lm++kgL+++hvkSHLQ+YR+
  Glyma.18G204900.2.p  67 PRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 120
                          8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-3063121IPR009057Homeodomain-like
PROSITE profilePS5129411.95563123IPR017930Myb domain
SuperFamilySSF466899.32E-1565121IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-2367122IPR006447Myb domain, plants
PfamPF002491.4E-968119IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MRMEEERHGS SECSKTSPSN EEDCEESEGY EDESKQNNNN GGSSSNSTVE ENEKKTTVRP  60
YVRSKMPRLR WTPDLHLRFV HAVQRLGGQE RATPKLVLQL MNIKGLSIAH VKSHLQMYRS  120
KKVDTNQETG DRNVYNLSQL PMLQGYNPSQ SSSYRYGYGD ASLAIYENMV HRPFMNRSSL  180
DESGAEFCGS RLTERIHGTN SNINWTRNMF QVDSSSSFNE PSTSKVQEPK HKFFSFGGNE  240
SSCTQIKMSQ VDLHQSTQLQ PGAQELMPNN KFATNEVELK TLKRKASDID LDLNLSLKLN  300
SRVNAENQGS MVDHEVVDSN LSLSLCSQSS SFSSNRLKNS QDHSKEQGEI IRASALDLTI  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-1768122458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-1768122458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-1768122357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-1768122357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-1768122357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-1768122357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-1768122458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-1768122458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-1768122458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-1768122458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-1768122458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-1768122458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G204900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-79AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006602682.10.0putative two-component response regulator ARR21 isoform X2
TrEMBLK7MTM60.0K7MTM6_SOYBN; Uncharacterized protein
STRINGGLYMA18G43550.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-54G2-like family protein