PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G204900.1.p
Common NameGLYMA_18G204900, LOC100802192
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 370aa    MW: 41601.1 Da    PI: 6.7411
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G204900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.62.5e-3267120255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          prlrWtp+LH rFv+av++LGG+e+AtPk +l+lm++kgL+++hvkSHLQ+YR+
  Glyma.18G204900.1.p  67 PRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 120
                          8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-3063121IPR009057Homeodomain-like
PROSITE profilePS5129411.95563123IPR017930Myb domain
SuperFamilySSF466891.02E-1465121IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-2367122IPR006447Myb domain, plants
PfamPF002491.4E-968119IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MRMEEERHGS SECSKTSPSN EEDCEESEGY EDESKQNNNN GGSSSNSTVE ENEKKTTVRP  60
YVRSKMPRLR WTPDLHLRFV HAVQRLGGQE RATPKLVLQL MNIKGLSIAH VKSHLQMYRS  120
KKVDTNQVLA DPRFLVETGD RNVYNLSQLP MLQGYNPSQS SSYRYGYGDA SLAIYENMVH  180
RPFMNRSSLD ESGAEFCGSR LTERIHGTNS NINWTRNMFQ VDSSSSFNEP STSKVQEPKH  240
KFFSFGGNES SCTQIKMSQV DLHQSTQLQP GAQELMPNNK FATNEVELKT LKRKASDIDL  300
DLNLSLKLNS RVNAENQGSM VDHEVVDSNL SLSLCSQSSS FSSNRLKNSQ DHSKEQGEII  360
RASALDLTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-1868122458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-1868122458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A9e-1868122357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-1868122357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-1868122357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-1868122357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-1868122458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-1868122458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-1868122458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-1868122458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-1868122458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-1868122458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G204900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-79AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014625870.10.0putative two-component response regulator ARR21 isoform X1
TrEMBLK7MTM50.0K7MTM5_SOYBN; Uncharacterized protein
STRINGGLYMA18G43550.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23783482
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-57G2-like family protein