PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G201800.1.p | ||||||||
Common Name | GLYMA_18G201800, LOC100527384 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | G2-like | ||||||||
Protein Properties | Length: 238aa MW: 26807.6 Da PI: 10.0348 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 93.2 | 2.2e-29 | 14 | 71 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktile...lmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLH+rFveav++LGG+e+AtPk il+ +m+v L ++hvkSHLQkYR+ Glyma.18G201800.1.p 14 KERLRWTQELHDRFVEAVNRLGGPERATPKGILKemkAMGVSELNIYHVKSHLQKYRI 71 68******************************7511167788999************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.897 | 11 | 74 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-27 | 12 | 72 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.58E-15 | 13 | 71 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-22 | 14 | 72 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.6E-8 | 16 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.4E-12 | 103 | 142 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MGSKQRLRGS ATAKERLRWT QELHDRFVEA VNRLGGPERA TPKGILKEMK AMGVSELNIY 60 HVKSHLQKYR ISKLIPESPT RGKLEKRSMS DILPNFSSIT ALQLKEVLQM QTGMQNRLRD 120 KTEVQRSLKL KIEAQGKYFE RIGQSNHSKT IIGKACKPFA STIASLPSLF EESESLKTQP 180 EEEHQSAKKQ KISGEGVFPT SFDHESSTPP ECYNETWDFS WSQLAAACQS PLVPSFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-21 | 13 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-21 | 13 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-21 | 14 | 73 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-21 | 14 | 73 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-21 | 14 | 73 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-21 | 14 | 73 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-21 | 13 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-21 | 13 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-21 | 13 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-21 | 13 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-21 | 13 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-21 | 13 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G201800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT092223 | 0.0 | BT092223.1 Soybean clone JCVI-FLGm-10K14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006601779.1 | 1e-176 | MYB-CC domain-containing transcription factor PHR29 isoform X1 | ||||
Swissprot | Q9SJW0 | 2e-43 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | K7MTI9 | 1e-175 | K7MTI9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G43130.2 | 1e-176 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10659 | 25 | 35 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 2e-45 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G201800.1.p |
Entrez Gene | 100527384 |