PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G191200.1.p
Common NameGLYMA_18G191200, LOC100798101
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 227aa    MW: 25886.3 Da    PI: 7.0189
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G191200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.7e-17550348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +WT+eEd ll+++++q+G g W++++   g++R++k+c++rw++yl
  Glyma.18G191200.1.p  5 AWTEEEDHLLKKCIQQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYL 50
                         7*******************************************97 PP
2Myb_DNA-binding49.11.3e-1556100147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg++ +eE e +++++k+lG++ W++Ia +++ gRt++++k++w+ +
  Glyma.18G191200.1.p  56 RGNFAEEEVEMIIKLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNCH 100
                          8999******************.*********.***********977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.777150IPR017930Myb domain
SMARTSM007175.8E-13252IPR001005SANT/Myb domain
PfamPF002491.1E-15550IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-21557IPR009057Homeodomain-like
SuperFamilySSF466898.07E-28597IPR009057Homeodomain-like
CDDcd001671.22E-10550No hitNo description
PROSITE profilePS5129425.11651105IPR017930Myb domain
SMARTSM007172.8E-1555103IPR001005SANT/Myb domain
PfamPF002492.0E-135698IPR001005SANT/Myb domain
CDDcd001675.64E-1158101No hitNo description
Gene3DG3DSA:1.10.10.602.2E-2458105IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGGVAWTEEE DHLLKKCIQQ YGEGKWHRVP LLAGLNRCRK SCRLRWLNYL RPNIKRGNFA  60
EEEVEMIIKL HKLLGNRWSL IAGRLPGRTA NDVKNYWNCH LSKKLNVIEA EDRPITRDVQ  120
VIRPQPRNIV GSSSVKRRGQ NESPTDKGVQ QESSMSSLTF DTADGQNHML DSQQDNNIYA  180
CLDQQGIVSE LSMDFQFEGF GAMMNGEGSS SQWDWGDLLL DMDLYK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-22610710110B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.440370.0flower
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G191200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006602623.11e-169transcription factor MYB90
RefseqXP_028213768.11e-169transcription factor MYB90-like
SwissprotQ9FNV93e-55MY113_ARATH; Transcription factor MYB113
TrEMBLA0A0B2SF141e-168A0A0B2SF14_GLYSO; Transcription factor MYB113
TrEMBLI1N2Q11e-168I1N2Q1_SOYBN; Uncharacterized protein
STRINGGLYMA18G41520.11e-169(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.15e-58myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]