PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G185900.1.p
Common NameGLYMA_18G185900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 181aa    MW: 20656.2 Da    PI: 8.4942
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G185900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000334264123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C  C++ Fs+   L  H++ H
  Glyma.18G185900.1.p 42 YSCYFCKRGFSNAQALGGHMNIH 64
                         99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.43E-63969No hitNo description
Gene3DG3DSA:3.30.160.603.6E-44068IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.974269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MSYCNFPFAL QTKMEFNSQN PKKSEIRWSP DNQGGPGQGK SYSCYFCKRG FSNAQALGGH  60
MNIHRKDRAA KLKQSSEENL LSLDISIKAT SDHPNDPSDF EEKILFRLGA GEEKHPRNHK  120
YPFNFFPRKD DHHDHAPQIP HLPSFVLGQM VEEKKAELDL ELRLGLHPRE SATLNTRSFF  180
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G185900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0927910.0BT092791.1 Soybean clone JCVI-FLGm-11B22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235396.21e-133uncharacterized protein LOC100527901
RefseqXP_028212212.11e-133uncharacterized protein LOC114394733
TrEMBLA0A0B2SJS61e-132A0A0B2SJS6_GLYSO; Transcriptional regulator TAC1
TrEMBLI1N2L11e-132I1N2L1_SOYBN; Uncharacterized protein
STRINGGLYMA18G40360.11e-133(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Representative plantOGRP19981133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.12e-15C2H2 family protein