PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G184500.1.p
Common NameGLYMA_18G184500, LOC100780060
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 665aa    MW: 74553 Da    PI: 6.2689
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G184500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.62.7e-24119219198
                          EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          f+kvlt sd++++g +++ +k+a+e+     ++k++ +++l+ +d++g +W++k+i+r++++r++lt+GW++Fv +++L +gD++vF   
  Glyma.18G184500.1.p 119 FCKVLTASDTSTHGGFSVLRKHATEClpaldMSKSTPTQELVAKDLQGYEWRFKHIFRGQPRRHLLTTGWSNFVTSKRLVAGDTFVFL-- 206
                          99****************************9555555679************************************************.. PP

                          SSSEE..EEEEE- CS
                   B3  86 grsefelvvkvfr 98 
                          + +++el+v+v+r
  Glyma.18G184500.1.p 207 RGNNGELRVGVRR 219
                          3489999****98 PP
2Auxin_resp90.72.6e-30245326183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse..rrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          a+ha++t++ F v+Y+Pra  s+F+v+v+k+++a+++k+ vGmRfk +fe+++s+e  +r+sGt+vgv+d++p +W nS+WrsLk
  Glyma.18G184500.1.p 245 ASHAVATQTLFVVYYKPRA--SQFIVSVNKYLEAINQKCNVGMRFKTRFEGDESPEnyKRFSGTIVGVEDISP-HWVNSNWRSLK 326
                          789***************8..9********************************9844578**********99.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.97E-38110248IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-38112234IPR015300DNA-binding pseudobarrel domain
CDDcd100171.36E-20117219No hitNo description
PROSITE profilePS5086312.379119221IPR003340B3 DNA binding domain
SMARTSM010191.9E-22119221IPR003340B3 DNA binding domain
PfamPF023624.7E-22119219IPR003340B3 DNA binding domain
PfamPF065078.5E-29245326IPR010525Auxin response factor
PfamPF023099.1E-12516641IPR033389AUX/IAA domain
PROSITE profilePS5174525.028554635IPR000270PB1 domain
SuperFamilySSF542775.89E-13557630No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MSLNRGGGGE EDELYEQLWK ACAGPHVEVP RTGQRVFYFP QGHMEQLEVS TNQELNQRIP  60
LFKLPSKILC RVVNVHLLAE QETDEVYAQI TLVPESNQAE PMSPDPCPAE LPSPRVHSFC  120
KVLTASDTST HGGFSVLRKH ATECLPALDM SKSTPTQELV AKDLQGYEWR FKHIFRGQPR  180
RHLLTTGWSN FVTSKRLVAG DTFVFLRGNN GELRVGVRRI APVQSSMPSS VISSQSMHLG  240
VLATASHAVA TQTLFVVYYK PRASQFIVSV NKYLEAINQK CNVGMRFKTR FEGDESPENY  300
KRFSGTIVGV EDISPHWVNS NWRSLKVQWD EPASFPRPDR VLPWEIEPIL ASVPTTSSQT  360
AAIKNKRPRQ ASELADLGDT PLAFPTFWDA GLTQSDMAKL SVMAEIKRSD SSSHMWHHNS  420
KSSNNGISMN QTEASWLSSP SQLYHDTTDD SKSISAWPIS KPHSERLNND HFLDQVDKEI  480
NKVEAATSYR LFGIDLIDHA RNNSLSAENA SGITSECKID VNHVSDISKA SKEWNQEQLQ  540
LSPKETQSKQ VCSRSCTKVQ MQGVAVGRAV DLTTLDGYDQ LVDELEKMFD IKGQLQLRNK  600
WEIVFTDDEG DMMLVGDDPW LEFCKMVRRI FIYSSQDVHK LSSGSKLPIS SMEEIVTSLD  660
TTET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-16323497355Auxin response factor 1
4ldw_A1e-16323497355Auxin response factor 1
4ldw_B1e-16323497355Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.349070.0leaf| meristem| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G184500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-142AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552183.10.0auxin response factor 9 isoform X1
RefseqXP_028214238.10.0auxin response factor 9-like isoform X1
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A445FUM30.0A0A445FUM3_GLYSO; Auxin response factor
TrEMBLI1N2J80.0I1N2J8_SOYBN; Auxin response factor
STRINGGLYMA18G40180.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Representative plantOGRP5501582
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9