PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G183100.1.p
Common NameGLYMA_18G183100, LOC100803946
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 309aa    MW: 34427.4 Da    PI: 5.3832
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G183100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.82e-32125181258
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                          dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+vers+edp++++itYeg H h
  Glyma.18G183100.1.p 125 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVERSNEDPDTLIITYEGLHLH 181
                          8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182908.37E-27122181IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-29123181IPR003657WRKY domain
PROSITE profilePS5081127.164123184IPR003657WRKY domain
SMARTSM007742.1E-35124183IPR003657WRKY domain
PfamPF031064.5E-26125181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MVELAMSKTM MEEVVMTTSW SEGSEDDDLV RELLDDGSPL LIEPPNTTTK ASSSDDQDQA  60
FNKFISNIYS GPTISDIENA LSVTNQRDHF PQLSSARVSI LERGLSKIEN KYTLKIKCFG  120
NVMGDDGYKW RKYGQKSIKN SPNPRSYYRC TNPRCSAKKQ VERSNEDPDT LIITYEGLHL  180
HFAYPYFLMG QLQQSNSHPP IKKSKPISPQ AQAQAHREDY VQEAQSNATW GMMSSTSLDS  240
TLDMAQENLG SQGLLEDMVP FMVRNPSNNV NSAHTKFSCS SYSSPPTSPL WTSTYSTTCY  300
TVGLNSST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-211251811571WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G183100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551480.20.0probable WRKY transcription factor 49
TrEMBLK7MT520.0K7MT52_SOYBN; Uncharacterized protein
STRINGGLYMA18G39970.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71183449
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.14e-51WRKY DNA-binding protein 49