PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G182500.6.p | ||||||||
Common Name | GLYMA_18G182500, LOC100801824 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GRAS | ||||||||
Protein Properties | Length: 738aa MW: 82875.6 Da PI: 6.5251 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 359.4 | 5.3e-110 | 365 | 735 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++lL+ cA+av+++d + a++lL++++++++p gd +qRla+ f+ +L+arl++++s++yk l +++ts ++ l+a++l+ ++P+ Glyma.18G182500.6.p 365 LRTLLVLCAQAVAADDYKGANELLKQIRQHSNPFGDGNQRLAHIFADGLEARLSGTGSQIYKGLVSKRTS---AADFLKAYHLYLAACPF 451 5789************************************************************999999...9**************** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 k++ ++ N +I ++ +++ r+HiiDf+i +G+QWp+L+q L+ ++g+p+lRiTg++sp++g +e++ etg+rLa +Ae+++v+fe+ Glyma.18G182500.6.p 452 RKMTAFISNVTIRKSSANSPRLHIIDFGILYGFQWPTLIQRLSL-AGGAPKLRITGIDSPQPGfrPAERIVETGRRLAAYAESFKVEFEY 540 ******************************************99.79******************************************* PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 n+ +ak++e+++leeL+++++E l+V + ++ +++ldesv ++s+r+++L+l+++++P+++++ + n++ F++rf eal +ys+lf Glyma.18G182500.6.p 541 NA-IAKKWETIQLEELKIDRDEYLVVTCFYRGKNVLDESVVVDSPRNKFLSLIRKINPNIFIHGITNGAFNAPFFVTRFREALFHYSSLF 629 **.7************************************************************************************** PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 d+lea ++re+ er+ +E+e++gre+ nv+aceg er+er et+++W++r+ +aGF + p++ +++k a + + + + + ++e+s++l Glyma.18G182500.6.p 630 DMLEAIVSREEWERMLIEKEIFGREALNVIACEGCERVERPETYRQWQARILRAGFLQQPFEREIVKRAIEKVTTSYHKDFVIDEDSQWL 719 *********************************************************************99999999888********** PP GRAS 359 vlgWkdrpLvsvSaWr 374 ++gWk+r ++++S+W+ Glyma.18G182500.6.p 720 LQGWKGRIIYALSCWK 735 ***************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 62.943 | 339 | 715 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.8E-107 | 365 | 735 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 738 aa Download sequence Send to blast |
MQRLMIMDPR LLGFSGSPNE IQLGNQRFEN GFFDQSREFG YLQSNLLPID TPSSSSVWTH 60 EEPSPEDCEF SDGILSYISQ ILMEEDMEDK TCMLQDSLDL QIAERSFYEV IGEKYPSSPL 120 GHPSSVDPDD GGGVDNFSEN YGTCSYNDGD LSSIFTNNSL RRNLGELPNQ NFRGNSISRS 180 SYSSPNSVIS SVEGPVDSPS SILQVPDLNS ETQSILQFQK GVEEASKFLP SGNGLFANLG 240 VANFSKLEPR VGSDELPVKV EKDEGESFPA GSKIRKHHHR EEGGVEENRS SKQAAIFSEP 300 TLRSSMIDII LLHSLGDGKK HFMARREALQ TKNEKIVVSN GKSKASNGGK GRSKKQNGKK 360 EVVDLRTLLV LCAQAVAADD YKGANELLKQ IRQHSNPFGD GNQRLAHIFA DGLEARLSGT 420 GSQIYKGLVS KRTSAADFLK AYHLYLAACP FRKMTAFISN VTIRKSSANS PRLHIIDFGI 480 LYGFQWPTLI QRLSLAGGAP KLRITGIDSP QPGFRPAERI VETGRRLAAY AESFKVEFEY 540 NAIAKKWETI QLEELKIDRD EYLVVTCFYR GKNVLDESVV VDSPRNKFLS LIRKINPNIF 600 IHGITNGAFN APFFVTRFRE ALFHYSSLFD MLEAIVSREE WERMLIEKEI FGREALNVIA 660 CEGCERVERP ETYRQWQARI LRAGFLQQPF EREIVKRAIE KVTTSYHKDF VIDEDSQWLL 720 QGWKGRIIYA LSCWKPA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-41 | 348 | 736 | 1 | 379 | Protein SCARECROW |
5b3h_D | 2e-41 | 348 | 736 | 1 | 379 | Protein SCARECROW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G182500.6.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006602595.1 | 0.0 | scarecrow-like protein 9 isoform X1 | ||||
Refseq | XP_006602598.1 | 0.0 | scarecrow-like protein 9 isoform X1 | ||||
Refseq | XP_006602599.1 | 0.0 | scarecrow-like protein 9 isoform X1 | ||||
Refseq | XP_014626521.1 | 0.0 | scarecrow-like protein 9 isoform X1 | ||||
Refseq | XP_014626522.1 | 0.0 | scarecrow-like protein 9 isoform X1 | ||||
Refseq | XP_014626523.1 | 0.0 | scarecrow-like protein 9 isoform X1 | ||||
Refseq | XP_014626524.1 | 0.0 | scarecrow-like protein 9 isoform X1 | ||||
Refseq | XP_014626525.1 | 0.0 | scarecrow-like protein 9 isoform X1 | ||||
Swissprot | O80933 | 0.0 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A0R0F237 | 0.0 | A0A0R0F237_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G39920.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G182500.6.p |
Entrez Gene | 100801824 |