PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.18G178400.1.p

Common Name

GLYMA_18G178400

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 358aa MW: 42121.2 Da PI: 5.2946

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.18G178400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	37.8	6.3e-12	68	139	1	72
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek 72 +fY+ Y + Fs++ks+ + ++ge+ ++tfvCskeg+r+++ + ++++++ ++ tr+gCk ++v+ ++ Glyma.18G178400.1.p 68 QFYKWYERANDFSIQKSHALIN-KKGETLQQTFVCSKEGYRQDRGLSpQNRKHEYKNFTRCGCKVYIRVHVNE 139 6**************99988.6777***************99866777778999999999999998874 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.5E-9	68	139	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.0E-13	252	307	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MCCWNEDGLD DNECFENNVL DDNELKDEED CDNEVLNDEG YHETILEDGV EYVVEINDAN 60 RLMINGYQFY KWYERANDFS IQKSHALINK KGETLQQTFV CSKEGYRQDR GLSPQNRKHE 120 YKNFTRCGCK VYIRVHVNEL TDRCGGHKHK LLNEQDCGLL SGHRKITAID AMQIENYRKV 180 VIRPPHIYAS LAQTSWGYNK VGYVRKDIYN YFARQGHEQS SDFNRALNYF HHLCSKDPMM 240 VVAYIVDDEN RLQHLFCVNH HNNTIVFATA LVTNETEETY MWLLEQFLKE MKGKHPSFII 300 TDGDLEIVEF DEKWNDMITR FGLEDNNWVI TLYERKQTWA TTYIKGIFFA CIRTVSQ*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MCCWNEDGLD DNECFENNVL DDNELKDEED CDNEVLNDEG YHETILEDGV EYVVEINDAN  60
RLMINGYQFY KWYERANDFS IQKSHALINK KGETLQQTFV CSKEGYRQDR GLSPQNRKHE  120
YKNFTRCGCK VYIRVHVNEL TDRCGGHKHK LLNEQDCGLL SGHRKITAID AMQIENYRKV  180
VIRPPHIYAS LAQTSWGYNK VGYVRKDIYN YFARQGHEQS SDFNRALNYF HHLCSKDPMM  240
VVAYIVDDEN RLQHLFCVNH HNNTIVFATA LVTNETEETY MWLLEQFLKE MKGKHPSFII  300
TDGDLEIVEF DEKWNDMITR FGLEDNNWVI TLYERKQTWA TTYIKGIFFA CIRTVSQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.18G178400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235915	1e-176	AC235915.2 Glycine max clone GM_WBc0232C06, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014626148.1	1e-145	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0R0F147	0.0	A0A0R0F147_SOYBN; Uncharacterized protein
STRING	GLYMA18G38935.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3265	7	34
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-21	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Glyma.18G178400.1.p