PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G155000.3.p
Common NameGLYMA_18G155000, LOC100819782
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 315aa    MW: 36349.2 Da    PI: 10.7278
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G155000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.77.7e-171761798
                         E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                         ++p+kf++++g+  + + tl l++++g +W++ l  +k++g+++++kGWkeF++ + L  g  +vF+ d +s f   v++f+
  Glyma.18G155000.3.p  1 MIPNKFVKKYGK--RLQNTLFLKTPNGAEWKMIL--KKRDGKIWFQKGWKEFAEYHSLAHGHLLVFRWDVTSHF--QVHIFD 76
                         69********94..5888****************..*******************************6655666..999997 PP
2B369.64.3e-22183281199
                          EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          f++v+ + + +++g l lp kf+++h ++ k + + ++l+ +sgr W  k+++ k++ ++ ++  W+ Fvk+n+Lk+gD+++F+l++ ++
  Glyma.18G155000.3.p 183 FLTVMHRTHISSHGSLNLPMKFCRSHlDLHK-KRRLISLQVLSGRIWPAKYQIHKQKTAIRFKLSWNAFVKDNNLKVGDVCIFELVHGTK 271
                          778888899999**************85554.5569***************999999999999***********************99** PP

                          E..EEEEE-S CS
                   B3  90 felvvkvfrk 99 
                           +++v++fr+
  Glyma.18G155000.3.p 272 LTFLVHIFRE 281
                          ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.5E-7178IPR003340B3 DNA binding domain
CDDcd100179.53E-18176No hitNo description
PfamPF023623.4E-14176IPR003340B3 DNA binding domain
PROSITE profilePS5086314.649178IPR003340B3 DNA binding domain
SuperFamilySSF1019361.88E-20185IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-21277IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.3E-24174282IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-24178282IPR015300DNA-binding pseudobarrel domain
CDDcd100177.17E-25181280No hitNo description
SMARTSM010196.0E-18183282IPR003340B3 DNA binding domain
PfamPF023621.5E-20183281IPR003340B3 DNA binding domain
PROSITE profilePS5086314.283183282IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MIPNKFVKKY GKRLQNTLFL KTPNGAEWKM ILKKRDGKIW FQKGWKEFAE YHSLAHGHLL  60
VFRWDVTSHF QVHIFDLSAL EIEYPTEIIK GKTASNRKGN ESPGDEHLEC HRSGQKRKVN  120
SVEFLQQCQM RSRKCVKVEN TMILPRQALH HTATKCKGKS KAMDNQVTAL DRASSFKSCN  180
PFFLTVMHRT HISSHGSLNL PMKFCRSHLD LHKKRRLISL QVLSGRIWPA KYQIHKQKTA  240
IRFKLSWNAF VKDNNLKVGD VCIFELVHGT KLTFLVHIFR ETDSSNCSTS QESGQMRAAC  300
QSQRKELKTI TATK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.441990.0pod| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G155000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551329.10.0B3 domain-containing transcription factor VRN1 isoform X1
RefseqXP_014625797.10.0B3 domain-containing transcription factor VRN1 isoform X2
RefseqXP_028213212.10.0B3 domain-containing transcription factor VRN1-like isoform X1
RefseqXP_028213213.10.0B3 domain-containing transcription factor VRN1-like isoform X2
TrEMBLA0A0B2Q6840.0A0A0B2Q684_GLYSO; B3 domain-containing transcription factor VRN1
TrEMBLA0A0R0FAI50.0A0A0R0FAI5_SOYBN; Uncharacterized protein
TrEMBLK7MSG40.0K7MSG4_SOYBN; Uncharacterized protein
STRINGGLYMA18G30790.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-32B3 family protein