PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G143800.1.p | ||||||||
Common Name | GLYMA_18G143800, LOC100784161 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 183aa MW: 20722.8 Da PI: 9.1832 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66 | 3.9e-21 | 12 | 57 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++ rqvtfskRr+g++KKA+ELS+LC++e+a+++fs +k y + Glyma.18G143800.1.p 12 KDPNTRQVTFSKRRTGLFKKANELSILCGVEIAIVVFSIGNKPYSF 57 56678*********************************98887766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 4.32E-26 | 1 | 73 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.2E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.553 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-19 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.9E-24 | 12 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-19 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-19 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MGRRKIQIAV VKDPNTRQVT FSKRRTGLFK KANELSILCG VEIAIVVFSI GNKPYSFGHP 60 SVDVVVTKFL QHATNSNDAL GSNNSSNEVV GDMERLNQQL SDLQTQILEE EIKGTKHDER 120 LKQHEVTQVF QYKELQGLCL ELQRKVKDYV DEIEVSECML LLAQEPVVGV RKEVITKKRR 180 KN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-18 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 1e-18 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 1e-18 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 1e-18 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 176 | 180 | KKRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G143800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003551226.1 | 1e-132 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | I1N1K6 | 1e-130 | I1N1K6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G20830.1 | 1e-131 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2424 | 29 | 79 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 1e-36 | AGAMOUS-like 29 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G143800.1.p |
Entrez Gene | 100784161 |