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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G140400.1.p | ||||||||
Common Name | GLYMA_18G140400, LOC100807136 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | YABBY | ||||||||
Protein Properties | Length: 217aa MW: 24064 Da PI: 5.8923 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 191.7 | 3.4e-59 | 6 | 161 | 2 | 165 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnve 87 ++f+ +eq+CyvqC+fC+til+vsvP + l++vvtvrCGhCtsllsvn++kas +lla+ hl+ +++ +e+ ++ + Glyma.18G140400.1.p 6 HLFDLPEQICYVQCGFCTTILMVSVPCSILSTVVTVRCGHCTSLLSVNMKKASlvpfHLLASLTHLE--------PKEGASEDGANKSLS 87 7899*********************************************999866666666666633........333333333333222 PP YABBY 88 keesastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 +++++ t ++ s+ e+e+v+++ + v +PPekrqr Psaynrfikeei+r+ka+nP+++h+eafs+aaknWa fP+ Glyma.18G140400.1.p 88 SYNTS-TMTN----SDCEEENVTQISDfVHKPPEKRQRTPSAYNRFIKEEIKRLKAENPNMAHKEAFSTAAKNWANFPP 161 22222.2222....3334444555555489***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.8E-62 | 11 | 161 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.57E-9 | 109 | 161 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 5.7E-6 | 113 | 161 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MSTLNHLFDL PEQICYVQCG FCTTILMVSV PCSILSTVVT VRCGHCTSLL SVNMKKASLV 60 PFHLLASLTH LEPKEGASED GANKSLSSYN TSTMTNSDCE EENVTQISDF VHKPPEKRQR 120 TPSAYNRFIK EEIKRLKAEN PNMAHKEAFS TAAKNWANFP PSPSDGEADS CNGTEQLVDL 180 DSHQEPRDAI EVDKEGQGFR GRKAPRNSIW ERTPFE* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First detected in a group of around 15 epidermal cells on the abaxial half of each ovule primordium (chalaza, outer integument initiation sites). Later present in the outer cell layer of the outer integument on the abaxial side of the ovule primordium. Confined to the chalazal end of the integument and disappears after anthesis. Also present in embryos at the globular stage. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G140400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003551210.1 | 1e-163 | axial regulator YABBY 4 | ||||
Refseq | XP_028212225.1 | 1e-163 | axial regulator YABBY 4-like | ||||
Swissprot | Q9LDT3 | 9e-72 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A0B2QSX2 | 1e-161 | A0A0B2QSX2_GLYSO; Axial regulator YABBY 4 | ||||
TrEMBL | K7MS11 | 1e-161 | K7MS11_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G19720.2 | 1e-162 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6144 | 28 | 52 | Representative plant | OGRP9612 | 7 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 4e-74 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G140400.1.p |
Entrez Gene | 100807136 |
Publications ? help Back to Top | |||
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