PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G126800.2.p | ||||||||
Common Name | GLYMA_18G126800, LOC100804328 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 250aa MW: 28686.3 Da PI: 8.3347 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55 | 1.4e-17 | 83 | 134 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++t+eq++ L++ Fe ++++ e++ +LAk+lg++ rqV +WFqNrRa+ k Glyma.18G126800.2.p 83 RRLTSEQVQFLQSNFEVENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFK 134 479***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 122.3 | 2.4e-39 | 81 | 172 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 k rrl++eqv++L ++Fe e+kLeperKv+la+eLg+qprqva+WFqnrRAR+ktkqlE+dy +Lk++y lk++ ++L +e+++L+ee+ Glyma.18G126800.2.p 81 KTRRLTSEQVQFLQSNFEVENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFKTKQLETDYGMLKASYHVLKRDYDNLLQENDKLKEEV 170 789************************************************************************************999 PP HD-ZIP_I/II 92 ke 93 ++ Glyma.18G126800.2.p 171 NS 172 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.28E-18 | 70 | 138 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.05 | 76 | 136 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.26E-14 | 79 | 137 | No hit | No description |
SMART | SM00389 | 4.0E-16 | 79 | 140 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.4E-15 | 83 | 134 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-19 | 83 | 143 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.8E-6 | 107 | 116 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 111 | 134 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.8E-6 | 116 | 132 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.9E-16 | 136 | 175 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MAGQKLHGGS SMTLLLQKER LPCSPELIQS FCFQNSEPSF QGSKSMANVV NVTHRPFFQG 60 PEKEENGNDA DFEVCLHQPG KTRRLTSEQV QFLQSNFEVE NKLEPERKVQ LAKELGMQPR 120 QVAIWFQNRR ARFKTKQLET DYGMLKASYH VLKRDYDNLL QENDKLKEEV NSLNRLIPRE 180 QEEQNSDDTS CDTVNSRHKE HKEHKDLIIN TGSENGSEVP LPVKIPPMLW NQTTQISRKM 240 KKTSSAKTS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 136 | RRARFKTKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G126800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006602336.1 | 0.0 | homeobox-leucine zipper protein HAT5 isoform X3 | ||||
Swissprot | Q02283 | 1e-42 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A0R0EZD2 | 0.0 | A0A0R0EZD2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G16390.2 | 1e-166 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 5e-45 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G126800.2.p |
Entrez Gene | 100804328 |
Publications ? help Back to Top | |||
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