PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G126800.1.p | ||||||||
Common Name | GLYMA_18G126800, LOC100804328 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 325aa MW: 37357.3 Da PI: 4.6967 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.4 | 2.1e-17 | 83 | 134 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++t+eq++ L++ Fe ++++ e++ +LAk+lg++ rqV +WFqNrRa+ k Glyma.18G126800.1.p 83 RRLTSEQVQFLQSNFEVENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFK 134 479***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 121.5 | 4.2e-39 | 81 | 172 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 k rrl++eqv++L ++Fe e+kLeperKv+la+eLg+qprqva+WFqnrRAR+ktkqlE+dy +Lk++y lk++ ++L +e+++L+ee+ Glyma.18G126800.1.p 81 KTRRLTSEQVQFLQSNFEVENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFKTKQLETDYGMLKASYHVLKRDYDNLLQENDKLKEEV 170 789************************************************************************************999 PP HD-ZIP_I/II 92 ke 93 ++ Glyma.18G126800.1.p 171 NS 172 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.05 | 76 | 136 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.67E-15 | 79 | 137 | No hit | No description |
SMART | SM00389 | 4.0E-16 | 79 | 140 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.1E-18 | 80 | 147 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.7E-15 | 83 | 134 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-19 | 83 | 143 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.0E-5 | 107 | 116 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 111 | 134 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.0E-5 | 116 | 132 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.3E-16 | 136 | 175 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MAGQKLHGGS SMTLLLQKER LPCSPELIQS FCFQNSEPSF QGSKSMANVV NVTHRPFFQG 60 PEKEENGNDA DFEVCLHQPG KTRRLTSEQV QFLQSNFEVE NKLEPERKVQ LAKELGMQPR 120 QVAIWFQNRR ARFKTKQLET DYGMLKASYH VLKRDYDNLL QENDKLKEEV NSLNRLIPRE 180 QEEQNSDDTS CDTVNSRHKE HKEHKDLIIN TGSENGSEVP LPVKVINKHE DANSAKSDVL 240 DSESRHFTDG NQSSYMEPAD SSHALEPDHS DFSQDEEDIL SQNILTMPFL PKVEDVCYEY 300 DEPNENSCSF RFPLEDQAFC FWSY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 136 | RRARFKTKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G126800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003553206.1 | 0.0 | homeobox-leucine zipper protein HOX20 isoform X1 | ||||
Refseq | XP_028213741.1 | 0.0 | homeobox-leucine zipper protein HOX20-like | ||||
TrEMBL | A0A445FSA0 | 0.0 | A0A445FSA0_GLYSO; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | K7MRP5 | 0.0 | K7MRP5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G16390.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1500 | 34 | 99 | Representative plant | OGRP129 | 16 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 7e-45 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G126800.1.p |
Entrez Gene | 100804328 |