PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G124800.1.p
Common NameGLYMA_18G124800, LOC100804480
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Whirly
Protein Properties Length: 230aa    MW: 25231.8 Da    PI: 10.0003
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G124800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly203.42.7e-63902281139
               Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkv 90 
                          s+yk+kaal++ ++ p+f  ldsg+ k++++G +ll++a+a+++r+ydW++kq+f+ls+ e++++++l++++s effhdp++++s+eGkv
  Glyma.18G124800.1.p  90 SIYKGKAALTLTPRPPEFMPLDSGAYKISKEGYVLLQFAPAVGTRQYDWNRKQVFSLSVGEMGSVISLGARDSYEFFHDPFKGKSDEGKV 179
                          7***************************************************************************************** PP

               Whirly  91 rkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                          rk lkvePlpdGsG+f+nlsv+n+lv+++es+++Pv+kae avl s ++
  Glyma.18G124800.1.p 180 RKILKVEPLPDGSGHFFNLSVQNKLVNVDESIYIPVTKAELAVLTSTFN 228
                          ********************************************99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.102.1E-6579228IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.02E-6183228IPR009044ssDNA-binding transcriptional regulator
PfamPF085369.8E-6191225IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MSNLQLQIHS PPPSLLSYSS SSLSSSSSLK LFPNHPFSSK SLPFNTPKPF SLRCRHSDLF  60
DQNTLASTPR PTRPSASVGA LPPRVYVGYS IYKGKAALTL TPRPPEFMPL DSGAYKISKE  120
GYVLLQFAPA VGTRQYDWNR KQVFSLSVGE MGSVISLGAR DSYEFFHDPF KGKSDEGKVR  180
KILKVEPLPD GSGHFFNLSV QNKLVNVDES IYIPVTKAEL AVLTSTFNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A2e-857922832181p24: plant transcriptional regulator PBF-2
1l3a_B2e-857922832181p24: plant transcriptional regulator PBF-2
1l3a_C2e-857922832181p24: plant transcriptional regulator PBF-2
1l3a_D2e-857922832181p24: plant transcriptional regulator PBF-2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.329650.0cotyledon| flower| hypocotyl| leaf| somatic embryo| stem
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G124800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352352e-71AC235235.1 Glycine max strain Williams 82 clone GM_WBb0028H01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006602322.11e-166single-stranded DNA-binding protein WHY1, chloroplastic
SwissprotQ9LL855e-91WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLI1N1831e-164I1N183_SOYBN; Uncharacterized protein
STRINGGLYMA18G16200.11e-165(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64163251
Representative plantOGRP23161635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.13e-89ssDNA-binding transcriptional regulator