PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G124700.1.p | ||||||||
Common Name | GLYMA_18G124700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 530aa MW: 58306.3 Da PI: 9.0863 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.6 | 8.3e-31 | 175 | 234 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt + +Cpv+k+v+r+aed +++++tYeg+Hnh+ Glyma.18G124700.1.p 175 MNDGCQWRKYGQKMAKGNPCPRAYYRCTVSpSCPVRKQVQRCAEDMSILITTYEGTHNHP 234 58**************************999****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.3E-32 | 160 | 236 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.29E-27 | 169 | 236 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.529 | 170 | 236 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-37 | 175 | 235 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.6E-27 | 176 | 234 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 530 aa Download sequence Send to blast |
MPKRNCIYFW KEYSMEAKQS EEINGNKDHN KLKREMGEVG EGNDNLKLSL AKLVKDSTSD 60 EESELVSLSL GISSTGQHEM KKKKNRNEKM RENEDLKDIL ALGLDIRFDS SAIKNLSTES 120 SCDGERKDEE LSETWPPSKV VKTIMRTRDK SEVSQHAELK KARVCIRARC DTLTMNDGCQ 180 WRKYGQKMAK GNPCPRAYYR CTVSPSCPVR KQVQRCAEDM SILITTYEGT HNHPLPTSAT 240 TIAYTTSAAA SMLQSPSLSS QLGPANSDTV PLINSSVAYN LNALNFTSSS YDQQFSKSSQ 300 HLYFHNSSIS TSNSHPTITL DLTSPQTSPH VGKFTPGLSF IPKHSSTNLH FSSSTFSPLQ 360 SSMLQSPWSP YGDCFNYEGL ITQNSNQNGF LTKTGKQPFQ GHLYQPNYIS NRVISQQPLP 420 DSVVAATKAI TATPKFQSAI AAALTAYVGN GVRENHVGAE SAGLDLNLGG DMPYTTKKAD 480 YTSNASRYKR MSSSAPTAPK RNLVISQPLQ ASKSSFGSSS LKSNQFIDQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-21 | 162 | 236 | 1 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G124700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014626273.1 | 0.0 | probable WRKY transcription factor 72 | ||||
TrEMBL | K7MRM9 | 0.0 | K7MRM9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G16170.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF650 | 34 | 134 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18860.1 | 4e-50 | WRKY DNA-binding protein 61 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G124700.1.p |