PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G123500.1.p | ||||||||
Common Name | GLYMA_18G123500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 280aa MW: 31693.4 Da PI: 5.7435 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57 | 3.2e-18 | 75 | 128 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Glyma.18G123500.1.p 75 KKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 128 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 132.3 | 1.9e-42 | 74 | 164 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrl+ eqvk+LE+sFe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr+yda+k++n++L++++++L++e Glyma.18G123500.1.p 74 EKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYDAIKADNDALQAQNQKLQTE 163 69**************************************************************************************98 PP HD-ZIP_I/II 91 l 91 + Glyma.18G123500.1.p 164 I 164 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.67E-19 | 68 | 132 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.394 | 70 | 130 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-18 | 73 | 134 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.76E-16 | 75 | 131 | No hit | No description |
Pfam | PF00046 | 1.5E-15 | 75 | 128 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-19 | 77 | 137 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.1E-5 | 101 | 110 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 105 | 128 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.1E-5 | 110 | 126 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.8E-16 | 130 | 170 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MAFFPANFML QTPHQDDHQP PPSLNSIITS CAPQEYHGGA SFLGKRSMSF SGIELGEEAN 60 AEEDLSDDGS QAGEKKRRLN MEQVKTLEKS FELGNKLEPE RKMQLARALG LQPRQIAIWF 120 QNRRARWKTK QLEKDYDLLK RQYDAIKADN DALQAQNQKL QTEILALKNR EPTESINLNK 180 ETEGSSSNRS ENSSEIKLDI SRTPAIDSPL STQQSNSRTL FPSSARPTGV AQLFQTTPRP 240 EIQCQKIDHM VKEESLSNMF CGIDDQSGLW PWLEQQHFN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 130 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.56312 | 0.0 | cotyledon| flower| hypocotyl| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G123500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094375 | 0.0 | BT094375.1 Soybean clone JCVI-FLGm-24F2 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028215323.1 | 0.0 | homeobox-leucine zipper protein ATHB-13-like | ||||
Swissprot | Q8LC03 | 1e-116 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A0B2RM11 | 0.0 | A0A0B2RM11_GLYSO; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | I1N172 | 0.0 | I1N172_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G15970.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1271 | 33 | 106 | Representative plant | OGRP129 | 16 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 1e-107 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G123500.1.p |
Publications ? help Back to Top | |||
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