PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.18G121400.1.p

Common Name

GLYMA_18G121400, LOC102665446

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

TCP

Protein Properties

Length: 274aa MW: 30207.6 Da PI: 9.7156

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.18G121400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.9	2.1e-39	38	148	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 +k+ +++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLl++a+pa++ +tgt++++a+++ ++s +ss+s++s+ Glyma.18G121400.1.p 38 KAKRAPTKDRHTKVEGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLREAEPAVISATGTGTIPANFTsLNVSLRSSGSSQSHYfl 127 57999****************************************************************999877788888775555566 PP TCP 89 ....................k 89 Glyma.18G121400.1.p 128 nrhnnlhnhntnnypfftttT 148 655555555555555554431 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.3E-38	43	180	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.15	44	98	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MEEQRVHHDE NVTRKPNFPL QLLEKKDEGP PPPPSAAKAK RAPTKDRHTK VEGRGRRIRM 60 PAACAARVFQ LTRELGHKSD GETIEWLLRE AEPAVISATG TGTIPANFTS LNVSLRSSGS 120 SQSHYFLNRH NNLHNHNTNN YPFFTTTTPP EFSSSGSYFK SHPSFSLMQN SRRFSRKRRH 180 EVISHVGNYC LSQMCTDSVP AMMSGADSVW AIPSVASSSA SGIHFTNFAS LLTGQHVGGA 240 MVSSETNFNV LATLNAYSGQ QPHHRHEGEE TNN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.18G121400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028213822.1	0.0	transcription factor TCP15-like
TrEMBL	A0A445FSC2	0.0	A0A445FSC2_GLYSO; Transcription factor TCP15 isoform A
TrEMBL	K7MRJ5	0.0	K7MRJ5_SOYBN; Uncharacterized protein
STRING	GLYMA18G15421.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21331	2	3
Representative plant	OGRP2699	12	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	8e-40	TCP family protein

Link Out ? help Back to Top
Phytozome	Glyma.18G121400.1.p
Entrez Gene	102665446