PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G118400.2.p
Common NameGLYMA_18G118400, LOC100812697
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HB-other
Protein Properties Length: 506aa    MW: 57416.3 Da    PI: 6.7394
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G118400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.2e-192075257
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                         +kR+  t+ ql+ Le++++ n+yp++e++ eLA++l+Lte+q++ WF+ rR k+kk
  Glyma.18G118400.2.p 20 KKRRLKTPAQLKGLEDFYNDNKYPTEEMKSELADELELTEKQISGWFCHRRLKDKK 75
                         89****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.7E-20475IPR009057Homeodomain-like
PROSITE profilePS5007116.9731676IPR001356Homeobox domain
SuperFamilySSF466894.71E-171884IPR009057Homeodomain-like
SMARTSM003893.3E-191880IPR001356Homeobox domain
PfamPF000462.0E-162075IPR001356Homeobox domain
CDDcd000861.79E-162076No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MEEATEFHSE ENKLSMEKNK KRRLKTPAQL KGLEDFYNDN KYPTEEMKSE LADELELTEK  60
QISGWFCHRR LKDKKMLNDE VCANGRHDRS SGVIQDRGSG LVQDSCGSTK HVDYRYLDPK  120
EVESHGLYNH GFSAADMMYG HNNHHYTEND SATDNTSSES SSSLQDRLLR QGKDLYDMEP  180
SSHLTPNGSL PPLNIKGANN LGYKPSGYLK VKGDIEHAAI TAVKKQLGKH YREDGPLLTV  240
EFDTIPPEAF ECQIADLANE AYYAANPALP NSPEVSAVKK QSSLSSRYDS YFTKISSQDS  300
HMDRGDFGSL HDSDFQDKKS FQVINQRQNF QSFTNPLPHK NSSLDLNADS TGEASAYNNI  360
KNRRKGTKHG FDGVRYDSAS NPSDHYEENN NLAVKQTDSL LHGYENSNLK NVQRSEYVKS  420
KPSNSVHKSQ IYLDTEERRG LNKRMAKEEK FDGDRKVKKQ YRDPDEVRAL TNEMMVAKRA  480
KVDPLEQYDV KQSSVAELEP RKSQR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11924KKRRLK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.630980.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G118400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006602294.10.0homeobox-DDT domain protein RLT1 isoform X1
TrEMBLI1N1440.0I1N144_SOYBN; Uncharacterized protein
STRINGGLYMA18G14910.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.14e-72HB-other family protein