PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G095600.1.p
Common NameGLYMA_18G095600, LOC102659401
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 530aa    MW: 58712.4 Da    PI: 6.342
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G095600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-1753100148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+WTt Ed +l d+v+++G g+W+++ r  g++R++k+c++rw ++l
  Glyma.18G095600.1.p  53 KGPWTTAEDAILTDYVTKHGEGNWNAVQRNTGLNRCGKSCRLRWANHL 100
                          79******************************************9986 PP
2Myb_DNA-binding521.6e-16106149146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g++++eE++++vd++ q+G++ W++ a+ ++ gRt++++k++w++
  Glyma.18G095600.1.p 106 KGAFSPEEEKIIVDLHSQFGNK-WARMAALLP-GRTDNEIKNYWNT 149
                          799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.94248100IPR017930Myb domain
SuperFamilySSF466899.36E-3051147IPR009057Homeodomain-like
SMARTSM007176.8E-1452102IPR001005SANT/Myb domain
PfamPF002492.0E-1453100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2354107IPR009057Homeodomain-like
CDDcd001673.33E-1055100No hitNo description
PROSITE profilePS5129424.27101155IPR017930Myb domain
SMARTSM007172.6E-15105153IPR001005SANT/Myb domain
PfamPF002491.7E-14106149IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-25108154IPR009057Homeodomain-like
CDDcd001674.36E-11108149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MEGMANICDD ATDGDNAFLT MFGGDESGGS GGSGGRSGGD QGGGNVEDVA LKKGPWTTAE  60
DAILTDYVTK HGEGNWNAVQ RNTGLNRCGK SCRLRWANHL RPNLKKGAFS PEEEKIIVDL  120
HSQFGNKWAR MAALLPGRTD NEIKNYWNTR IKRRQRQGLP LYSDEHDHNH RSTTPTSPTT  180
PSPCLTPTGS NPNIATSFEF FNQNQQQQQQ YQHQYQYQQQ QHPLSPTASH HSPLSSPLQH  240
RQPFTSSSPH NFLDHSPLPL SSSSPSPLSF SFQKPAPMLS TPLRFKRYRT SPSYNNHLSD  300
PPLTTQFPHL DGFRFPVSSG FSQFFQPSLL DSDRGVSSSS SLAFQPKLEL PSSQYYKPPH  360
EQDIKLDIEF NDPSFQSSSS GFLGDLLFEA QAMASGQNSK KRGYLSLNER NDVFDACQSF  420
ENFPSSSLYW PSSTSEPKPK EEAPDFSKFM NEEVSSLLTV VPSSSMHGHE WHNNSATEVS  480
NVQSSGSGKT DDNFVLDIKP ITSLFPLSNT ASHDENQGCY SWDNLPGLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-30511545107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G095600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150382e-91AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014625862.10.0transcription factor MYB101
TrEMBLK7MQV70.0K7MQV7_SOYBN; Uncharacterized protein
STRINGGLYMA18G10921.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.13e-67myb domain protein 101