PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G092200.1.p
Common NameGLYMA_18G092200, LOC100779533
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 479aa    MW: 52684.1 Da    PI: 6.8833
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G092200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.85.9e-30247304258
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                          +Dg++WrKYGqK+ kg+++prsYYrC++   Cpv+k+v+r+aed +v+++tYeg+Hnh
  Glyma.18G092200.1.p 247 SDGCQWRKYGQKMAKGNPCPRSYYRCSMGtACPVRKQVQRNAEDLSVLITTYEGQHNH 304
                          7***************************98**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-32231306IPR003657WRKY domain
SuperFamilySSF1182902.48E-26239307IPR003657WRKY domain
PROSITE profilePS5081129.046241307IPR003657WRKY domain
SMARTSM007747.4E-35246306IPR003657WRKY domain
PfamPF031062.3E-26248304IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MYKKLTNNIE DTCNNDLSNA AVTQSSPMMS FNGKRLVVDE IDFFTEKKKK SEDVDNQLVH  60
HQMELPINTN LDLLITKSST SNRSNMEEGP SESRDNTRNK FAAMLAELHI INAENQHLRE  120
LVDQVNNKYN DLHKDLTKLM QKQHKNEING AIEEKDKRDD MIISRSFLDI GIATKEDPSQ  180
QHSEAKLQES KNITELMECK NRDVVELDSG KDSAKSRRDK HESSETMSMI KKARVSVRTK  240
TDSSMISDGC QWRKYGQKMA KGNPCPRSYY RCSMGTACPV RKQVQRNAED LSVLITTYEG  300
QHNHVLPPTA KAIASTTSAA ASMLLSGSML SSDGLIYPNI LESASLPFSQ NLATLSTSAP  360
FPTITLDLTQ STTNNSSQLL QGAPQDNQHI YSLLSPLLAQ KFMSSATNIF YQNHQTKVSS  420
LHGSQGTETA SFVDTVNAAT AAITGDPKFS AAVMAAITSI IGSSHPNING TSGDPALQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-24233308175WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G092200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2357441e-112AC235744.1 Glycine max strain Williams 82 clone GM_WBb0115C15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006602186.10.0WRKY transcription factor 6
TrEMBLK7MQS90.0K7MQS9_SOYBN; Uncharacterized protein
STRINGGLYMA18G10324.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139131222
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.12e-81WRKY family protein