PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G081100.1.p
Common NameGLYMA_18G081100, LOC100785400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 546aa    MW: 61188.9 Da    PI: 5.0256
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G081100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS424.21.1e-1291755441373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l+e L++cAea++ +d+e +++l+++l++++s +g+p+qRl ay++e   ar+a s+s++yk+l++se +     e l+++++++e++P+
  Glyma.18G081100.1.p 175 LKEMLYTCAEAMARNDMETTDWLVSELRKMVSISGNPIQRLGAYILESFVARMAASGSTIYKSLKCSEPT---GNELLSYMHVLYEICPY 261
                          5789*****************************************************************9...99*************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          +kf+++ aN aI ea+++e++vHi+Df+i+qG+QW++L+qaLa Rp+gpp++Ri gv+++ s   +   l  +g+rL+  A++++vpfef
  Glyma.18G081100.1.p 262 FKFGYMSANGAIAEALKEESEVHIVDFQIGQGTQWVSLIQALAHRPGGPPKIRISGVDDSYSAyaRGGGLDIVGKRLSAHAQSCHVPFEF 351
                          ***********************************************************877788999********************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          n+ v    ++++le+L++ p Ea+aVn++++lh+++desv+++++rd++L+l k+lsPkvv++veqe ++n+++Fl+rf e+++yy a+f
  Glyma.18G081100.1.p 352 NA-VRVPASQVQLEDLELLPYEAVAVNFAISLHHVPDESVNSHNHRDRLLRLAKRLSPKVVTLVEQEFNTNNAPFLQRFDETMKYYLAVF 440
                          **.7999*********************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          +s+++ lpre++eri+vE+++l+re+vn++aceg+er+erhe l+kW++r+++aGF+p+pls+ +++++k ll+ ++++ y++ee++g+l
  Glyma.18G081100.1.p 441 ESIDTVLPREHKERINVEQHCLAREVVNLIACEGEERVERHELLNKWKMRFTKAGFTPYPLSSVINSSIKDLLQSYHGH-YTLEERDGAL 529
                          *****************************************************************************77.********** PP

                 GRAS 359 vlgWkdrpLvsvSaW 373
                          +lgW+++ L++ +aW
  Glyma.18G081100.1.p 530 FLGWMNQVLIASCAW 544
                          *************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.868149526IPR005202Transcription factor GRAS
PfamPF035143.8E-127175544IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MQTSQNHKIS YGSGGFYVEP VQNLESYCMP SSENIDNYSS SDNSSQTTYP SVQTLEQYCT  60
LESASTGNSF PNQNSPPALS FSSNNSPLSK LESNSYVLRP QHSLEIASGS PEDDSYLTHD  120
LDDLTHKIRE LETAMLGPNA DMLDIYGTVI PEPDSFLLEA EKWKKLMEMS SRGDLKEMLY  180
TCAEAMARND METTDWLVSE LRKMVSISGN PIQRLGAYIL ESFVARMAAS GSTIYKSLKC  240
SEPTGNELLS YMHVLYEICP YFKFGYMSAN GAIAEALKEE SEVHIVDFQI GQGTQWVSLI  300
QALAHRPGGP PKIRISGVDD SYSAYARGGG LDIVGKRLSA HAQSCHVPFE FNAVRVPASQ  360
VQLEDLELLP YEAVAVNFAI SLHHVPDESV NSHNHRDRLL RLAKRLSPKV VTLVEQEFNT  420
NNAPFLQRFD ETMKYYLAVF ESIDTVLPRE HKERINVEQH CLAREVVNLI ACEGEERVER  480
HELLNKWKMR FTKAGFTPYP LSSVINSSIK DLLQSYHGHY TLEERDGALF LGWMNQVLIA  540
SCAWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-571795448374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.127980.0leaf| meristem| root| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G081100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551507.10.0scarecrow-like protein 21
RefseqXP_006602158.10.0scarecrow-like protein 21
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLI1N0D20.0I1N0D2_SOYBN; Uncharacterized protein
STRINGGLYMA18G09030.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Representative plantOGRP14091447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]