PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G066400.1.p | ||||||||
Common Name | GLYMA_18G066400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 417aa MW: 47405.8 Da PI: 8.4682 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.6 | 2.9e-18 | 103 | 149 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd +l+++vkq+G + W++Ia+++ gR +kqc++rw+++l Glyma.18G066400.1.p 103 KGQWTDEEDRKLLKLVKQHGVRKWSLIAEKLD-GRAGKQCRERWHNHL 149 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 52.2 | 1.4e-16 | 155 | 197 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++W++eE+ +lv+ +++ G++ W+ Ia++++ gRt++ +k++w+ Glyma.18G066400.1.p 155 KDSWSEEEERILVETHAKIGNR-WAEIAKCIP-GRTENAIKNHWN 197 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 29.304 | 98 | 153 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.29E-30 | 100 | 196 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.9E-17 | 102 | 151 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-28 | 104 | 156 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.96E-15 | 106 | 149 | No hit | No description |
Pfam | PF13921 | 2.5E-20 | 106 | 163 | No hit | No description |
SMART | SM00717 | 3.2E-15 | 154 | 202 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.035 | 154 | 204 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-20 | 157 | 202 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.73E-11 | 157 | 200 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MCSVGPPFTA IERFLWGQQQ QTQYNVANNG HASIFGGSTY KFMWPNNNST TQEVSYAEQI 60 IFANNNEEAL NWSQQVCFKE DGKNIAKVVG RRPKKGSSVP LIKGQWTDEE DRKLLKLVKQ 120 HGVRKWSLIA EKLDGRAGKQ CRERWHNHLR PDIKKDSWSE EEERILVETH AKIGNRWAEI 180 AKCIPGRTEN AIKNHWNATK RRQNSRRKNK RAGTSNGKPQ PSILQDYIKS LTLITSTTTS 240 PVEQQIAPQL SNSVTNNENS SLMAESYDDE LLFMQQLFKE NNANNVESLK HSKNIINNSS 300 AASLDCYYHQ TNYNGGGQLL TDVTQCGFVV HSNPNTTNSH HNNMCLDESL FISRKSTTPH 360 APINYLDSDH VYLSHLLNGT AGSSFCYNNY GVHNQNNMEL QLGNQDCFEE RGRWIW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-45 | 101 | 203 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-45 | 101 | 203 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 199 | 210 | KRRQNSRRKNKR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00567 | DAP | Transfer from AT5G58850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G066400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003552966.1 | 0.0 | transcription factor MYB64 | ||||
TrEMBL | K7MQB8 | 0.0 | K7MQB8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G07360.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4129 | 31 | 58 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58850.1 | 7e-69 | myb domain protein 119 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G066400.1.p |