PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G056600.1.p | ||||||||
Common Name | GLYMA_18G056600, LOC100127397 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 543aa MW: 59860.6 Da PI: 7.342 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.2 | 1.7e-33 | 218 | 275 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers d++++ei+Y+g+Hnh+k Glyma.18G056600.1.p 218 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGTHNHPK 275 8****************************************.***************85 PP | |||||||
2 | WRKY | 107.5 | 6.5e-34 | 377 | 435 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+ Glyma.18G056600.1.p 377 LDDGYRWRKYGQKVVKGNPNPRSYYKCTFPGCPVRKHVERASQDLRAVITTYEGKHNHD 435 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.2E-28 | 212 | 276 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.06E-25 | 216 | 276 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-36 | 217 | 275 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.778 | 218 | 276 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.2E-26 | 218 | 274 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.8E-37 | 362 | 437 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-29 | 369 | 437 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.792 | 372 | 437 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-39 | 377 | 436 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.1E-26 | 378 | 435 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MITSFSDLLS SPTTDHNLGV SERPHLKSSS SDQAGSSGGV PKFKSTPPPS LPLSHHLPPI 60 FSPSSYFNFN IPHGLSLAEL LDSPVLLNSS NVLPSPTTGS FAGQGFNWKS SYGESQQHVK 120 EEDKSFSSFS FQTQTHPPLP SSNGFQSSTG VVQTGWSFPE IAKQDGFASR MSMSMVKTET 180 TSAMQSFNSE NNNHRNGFQS DHKNYQPPQV QTLSRRSDDG YNWRKYGQKQ VKGSENPRSY 240 YKCTYPNCPT KKKVERSLDG QITEIVYKGT HNHPKPQAAK RNSLSASSLA IPHSNHGGIN 300 ELPHQMDSVA TPENSSISME DDDFDHTKSG GDEFDNDEPD AKRWRIEGEN EGMPAIESRT 360 VREPRVVFQT TSDIDILDDG YRWRKYGQKV VKGNPNPRSY YKCTFPGCPV RKHVERASQD 420 LRAVITTYEG KHNHDVPAAR GSGNNSMNRS LPITNTTNNT SAATSLYTNN NSLQSLRPPA 480 APERTSSHFN PNMQQSSSGS FGFSGFGNPL MGSYTNQQSD NVFITRAKEE PGDDSFLDSF 540 LC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-37 | 210 | 438 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 4e-37 | 210 | 438 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.34607 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000269|PubMed:19199048}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in aleurone cells (PubMed:15618416). Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos (PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:26025535}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G056600.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU019591 | 0.0 | EU019591.1 Glycine max WRKY62 (WRKY62) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001348336.1 | 0.0 | WRKY transcription factor 62 | ||||
Swissprot | Q6IEQ7 | 1e-132 | WRK24_ORYSJ; WRKY transcription factor WRKY24 | ||||
TrEMBL | K7MQ56 | 0.0 | K7MQ56_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G06360.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1077 | 34 | 114 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38470.1 | 1e-103 | WRKY DNA-binding protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G056600.1.p |
Entrez Gene | 100127397 |
Publications ? help Back to Top | |||
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