PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G052700.1.p
Common NameGLYMA_18G052700, LOC100791258
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 469aa    MW: 52756.3 Da    PI: 6.3728
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G052700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.45.1e-11417466147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                          + +W+  E+e l  +vk++G g+W+tI +      ++R++ ++k++w++ 
  Glyma.18G052700.1.p 417 KRKWSSLEEETLRAGVKMFGEGNWATIRSFYSnifENRSGVDLKDKWRNM 466
                          569*********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-14410468IPR009057Homeodomain-like
PROSITE profilePS5129417.487412468IPR017930Myb domain
SuperFamilySSF466895.93E-15413467IPR009057Homeodomain-like
SMARTSM007173.4E-6416468IPR001005SANT/Myb domain
PfamPF002491.6E-8417466IPR001005SANT/Myb domain
CDDcd116605.13E-18418468No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MNSDISRWVM EFLLRSSVPD SLIQKTLTAL PLSPAEPRLK KNLLLRTLQT LLRRATLSET  60
ALDILEDLAP VSDAQRRAYC AVAVECTVKY LAACPDVIDG EYAGAVRRIW RGRVAALQAR  120
RSGLVSGELV RWRDEIENAL GEDSRAARER LAGLNSRRDA MNEVRVYLKE AWEMMGPSFL  180
ETVAATEKKN DEGACDNGSG NGNDDDHDDG ACMEDVAMHY ENQEPLEESV DANQEVGGSD  240
LTPQRDKAIL KRNPQLKHKH SAFRASHKGR GIKISSPEEV ESTKPWRKHD PVPSAEVKKI  300
RESLKSSSSE LQALVNDPLP DALHISDVVR SKLATSDTKI EPPIENQHED VEVQDPDVCL  360
SIVPFQPNDV NLGKKSSVHC SNIHQPSLME RNRSARTFEW EDSIDNSQQA RQPRRRKRKW  420
SSLEEETLRA GVKMFGEGNW ATIRSFYSNI FENRSGVDLK DKWRNMIR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1412416PRRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.611120.0hypocotyl| leaf| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G052700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552913.10.0uncharacterized protein LOC100791258 isoform X1
RefseqXP_028214821.10.0uncharacterized protein LOC114396834 isoform X1
RefseqXP_028214822.10.0uncharacterized protein LOC114396834 isoform X1
RefseqXP_028214823.10.0uncharacterized protein LOC114396834 isoform X1
TrEMBLA0A445FPH60.0A0A445FPH6_GLYSO; Uncharacterized protein
TrEMBLK7MQ330.0K7MQ33_SOYBN; Uncharacterized protein
STRINGGLYMA18G05900.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Representative plantOGRP15031424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.17e-15TRF-like 5